Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.8e-166 589.3 330 100.0
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 6.8e-150 534.3 331 88.8
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 3.2e-147 525.4 330 90.0
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.1e-142 510.4 340 85.6
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 2.9e-140 502.3 331 82.5
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.8e-135 485.7 331 80.4
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.8e-135 485.7 331 80.4
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.8e-135 485.7 331 80.4
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 8.1e-135 484.2 330 83.3
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 1.1e-134 483.8 332 83.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 1.1e-134 483.8 332 83.7
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.2e-133 480.3 334 83.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.4e-133 478.8 376 71.8
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 8.6e-129 464.2 341 83.3
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 7.3e-128 461.1 339 81.7
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 4.7e-127 458.4 339 81.7
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 4.9e-124 448.4 368 76.1
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 7.1e-115 417.9 294 81.3
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.3e-113 413.7 341 67.7
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.5e-101 373.6 331 62.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.4e-99 367.1 328 59.1
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.1e-98 363.2 328 58.5
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 3.9e-97 359.0 328 57.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.7e-96 355.1 334 59.3
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 7.4e-96 354.8 330 58.2
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.4e-94 350.5 334 59.3
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.8e-94 350.1 334 58.1
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.2e-93 347.4 334 57.5
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.9e-92 342.8 334 56.6
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.8e-92 342.4 334 59.0
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.5e-92 341.7 329 57.8
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 8.4e-92 341.3 334 58.7
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 3.2e-91 339.3 333 57.7
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.2e-91 339.0 334 56.3
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.2e-91 339.0 334 56.0
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.1e-91 338.2 338 56.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 2.1e-90 336.7 333 53.8
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.0e-89 334.3 334 56.9
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-88 330.9 334 55.4
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.3e-88 329.3 338 55.6
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 4.3e-88 328.9 335 55.2
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 7.4e-88 328.2 331 54.4
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 7.4e-88 328.2 328 54.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 1.6e-87 327.0 331 54.4
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.2e-87 326.6 336 55.7
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.3e-87 325.1 332 59.6
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-86 324.3 334 53.3
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.4e-86 323.9 331 53.8
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.4e-86 323.2 333 53.2
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 4.1e-86 322.4 329 52.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 3.4e-85 319.3 334 53.6
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.3e-84 317.4 328 53.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.9e-84 316.2 329 51.1
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 6.5e-84 315.1 335 52.8
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.1e-83 314.3 331 51.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.4e-83 313.9 335 52.5
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-83 313.2 336 52.4
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.2e-83 312.8 335 52.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 5.5e-83 312.0 332 52.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 7.2e-83 311.6 336 52.4
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.2e-83 311.6 334 54.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 7.2e-83 311.6 334 52.4
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.2e-82 310.8 331 52.9
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.6e-82 310.5 328 53.7
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.7e-82 309.7 333 54.7
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.0e-81 307.8 330 53.9
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.0e-81 307.8 335 51.0
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.3e-81 306.6 329 54.1
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.3e-81 306.6 334 50.6
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 3.0e-81 306.2 334 52.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 8.8e-81 304.7 335 50.4
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.3e-80 302.8 333 48.6
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 3.3e-80 302.8 330 50.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.3e-80 302.4 335 53.1
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 5.7e-80 302.0 341 50.7
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 9.7e-80 301.2 333 48.9
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.3e-79 300.8 388 47.2
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.2e-79 300.1 330 53.3
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 2.2e-79 300.1 356 51.1
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.4e-78 297.4 337 51.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.1e-78 295.8 285 54.7
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.3e-78 295.4 330 48.8
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.9e-78 295.0 334 50.9
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 9.1e-78 294.7 292 52.7
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.2e-77 294.3 332 52.4
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.2e-77 294.3 333 52.0
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.0e-77 293.5 334 49.7
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.6e-77 293.1 333 48.6
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 3.4e-77 292.7 270 55.9
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 4.5e-77 292.4 332 50.0
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.5e-77 292.4 337 51.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.3e-76 290.8 342 48.2
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.7e-76 290.4 334 53.9
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.7e-76 290.4 277 54.5
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.5e-76 288.1 334 51.2
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.5e-75 286.6 336 50.6
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 7.2e-75 285.0 327 52.0
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 2.7e-74 283.1 332 50.3
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.4e-73 280.8 339 47.2
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 1.8e-73 280.4 334 50.9
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.9e-73 279.3 335 48.1
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 5.1e-73 278.9 347 49.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.5e-72 277.3 334 50.3
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 3.3e-72 276.2 339 47.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 7.4e-72 275.0 335 49.0
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.7e-71 273.9 370 48.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 5.3e-70 268.9 287 49.8
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.0e-69 266.9 344 45.6
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.0e-68 264.6 328 47.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.3e-68 264.2 340 44.1
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.7e-68 263.8 327 47.1
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.0e-68 262.3 340 44.4
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.0e-68 262.3 325 47.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 6.5e-68 261.9 331 46.2
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 8.5e-68 261.5 337 49.0
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.1e-67 261.2 340 44.1
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.5e-67 260.8 326 46.0
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 7.2e-67 258.5 337 47.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 6.1e-66 255.4 331 44.4
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 8.0e-66 255.0 334 46.4
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.8e-65 253.8 326 45.4
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.9e-65 252.7 310 48.7
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.9e-65 252.7 324 47.2
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.8e-65 251.5 288 50.3
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.5e-64 250.8 324 46.9
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.6e-64 250.0 332 47.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 4.4e-64 249.2 220 59.5
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.2e-63 246.9 250 54.0
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.9e-60 236.5 177 66.7
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.9e-60 236.5 320 48.8
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.5e-59 233.4 333 43.8
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 4.2e-59 232.6 336 44.0
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.2e-58 231.1 247 53.4
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.0e-57 226.5 233 53.2
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.7e-55 220.7 305 42.6
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.5e-53 213.0 299 45.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.5e-53 213.0 340 42.9
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.5e-51 207.6 327 41.6
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 9.4e-51 204.9 245 46.9
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.6e-50 204.1 330 42.4
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 8.0e-50 201.8 236 49.6
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.8e-49 200.7 161 65.2
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 2.8e-47 193.4 176 56.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.4e-46 190.3 162 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 8.6e-44 181.8 231 44.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 9.5e-43 178.3 213 53.5
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 6.8e-41 172.2 327 39.1
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.0e-40 170.6 203 55.2
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.6e-40 170.2 205 54.6
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.8e-37 158.7 149 51.7
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.0e-36 158.3 203 49.3
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.7e-36 157.5 186 49.5
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.0e-33 146.4 127 56.7
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.6e-29 132.9 208 44.2
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 3.0e-28 130.2 130 47.7
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.1e-25 121.7 128 47.7
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-25 121.7 144 45.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 9.8e-24 115.2 99 59.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.3e-23 114.8 209 37.8
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.6e-21 107.8 131 47.3
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.9e-19 100.9 135 43.7
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.6e-19 99.4 174 37.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.6e-18 96.7 219 33.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.4e-17 94.7 103 46.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.2e-13 81.6 91 46.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.0e-12 77.0 59 62.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 3.3e-11 73.6 242 29.3
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 4.0e-09 66.6 140 35.7
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.5e-08 64.7 58 56.9
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 7.1e-06 55.8 41 63.4


User provided reference genes

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