Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 2.9e-208 728.8 507 100.0
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 6.1e-182 641.3 505 90.9
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.7e-179 632.1 507 90.7
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 5.1e-173 611.7 507 89.3
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 1.1e-170 604.0 508 78.5
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.8e-162 576.6 511 86.3
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 2.4e-162 576.2 510 86.9
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 4.1e-162 575.5 510 86.9
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 3.8e-160 568.9 512 85.5
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.1e-159 567.4 511 85.5
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 7.2e-159 564.7 512 85.7
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 6.3e-155 551.6 504 83.7
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 4.9e-115 419.1 517 70.6
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.5e-108 397.5 338 97.0
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.8e-108 395.6 493 69.8
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.9e-107 393.3 495 69.5
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.9e-107 393.3 495 69.5
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.4e-106 389.0 493 69.2
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.1e-105 387.1 493 69.2
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 3.9e-104 382.9 514 65.4
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 2.5e-103 380.2 495 69.1
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 4.3e-103 379.4 479 69.9
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.2e-100 371.3 476 69.7
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.4e-100 369.8 532 62.8
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 9.9e-100 368.2 506 65.8
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 4.2e-98 362.8 474 68.1
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 6.2e-94 349.0 486 68.1
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 2.9e-91 340.1 525 61.9
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.4e-90 337.0 479 63.9
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 9.3e-90 335.1 531 61.4
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.7e-89 333.6 522 63.6
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.3e-88 330.5 531 60.1
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.0e-88 330.1 531 61.0
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 3.0e-88 330.1 517 62.3
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 6.7e-88 328.9 473 62.6
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.9e-87 327.4 519 62.4
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.9e-87 327.4 471 63.9
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 7.4e-87 325.5 472 64.8
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.3e-86 324.7 474 65.2
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 1.6e-86 324.3 524 61.5
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.1e-85 321.6 531 60.8
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 2.4e-85 320.5 475 63.4
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 5.3e-85 319.3 547 57.2
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 6.9e-85 318.9 491 63.5
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 2.0e-84 317.4 476 65.5
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 4.5e-84 316.2 487 61.0
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.9e-83 313.5 488 63.1
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 3.8e-83 313.2 472 66.1
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.4e-82 311.2 501 60.9
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.5e-82 310.5 343 80.2
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 9.3e-82 308.5 521 58.5
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.6e-81 307.8 514 57.2
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 1.3e-80 304.7 488 59.2
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.8e-80 304.3 474 63.5
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.5e-79 301.2 483 63.1
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.5e-79 300.4 349 78.2
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 3.3e-79 300.1 479 61.8
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 4.3e-79 299.7 502 62.4
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 4.3e-79 299.7 473 63.2
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.6e-78 297.7 331 65.9
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 3.7e-78 296.6 471 59.9
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 4.8e-78 296.2 473 62.4
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.1e-77 295.0 506 58.9
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.8e-77 294.3 500 59.8
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 1.2e-76 291.6 477 61.4
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.0e-76 290.8 457 62.8
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 2.0e-76 290.8 508 60.4
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.5e-76 289.7 408 69.6
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.7e-75 287.7 477 61.4
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.7e-75 287.7 500 61.4
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 2.2e-75 287.3 480 61.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 6.5e-75 285.8 472 59.1
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 1.4e-74 284.6 455 62.4
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 4.2e-74 283.1 482 60.2
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 4.6e-73 279.6 485 60.2
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 6.1e-73 279.3 470 62.3
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 3.9e-72 276.6 468 61.1
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 5.1e-72 276.2 472 61.7
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.5e-71 274.6 480 57.3
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.7e-70 270.0 501 56.5
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 6.3e-70 269.2 487 58.3
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.1e-69 268.5 485 59.2
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.4e-69 268.1 515 54.2
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.1e-69 266.9 494 56.9
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.5e-68 264.6 509 54.8
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 7.7e-68 262.3 324 76.5
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.9e-66 257.7 506 53.6
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 2.5e-66 257.3 440 59.1
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 2.3e-64 250.8 292 82.5
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 5.1e-64 249.6 464 58.6
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.7e-63 246.1 516 54.5
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 3.1e-61 240.4 502 54.8
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.2e-60 238.4 495 54.9
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.1e-58 231.9 474 60.1
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 2.0e-55 221.1 292 81.5
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 3.3e-55 220.3 507 54.0
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 5.7e-55 219.5 338 69.5
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 4.8e-54 216.5 157 74.5
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 7.0e-53 212.6 240 53.3
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 7.0e-53 212.6 363 60.1
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.6e-47 194.1 440 53.6
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 6.5e-43 179.5 292 71.2
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 8.5e-43 179.1 299 54.2
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 4.2e-42 176.8 175 62.3
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 5.5e-42 176.4 235 79.6
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 4.0e-40 170.2 285 73.7
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.2e-39 168.7 495 29.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 7.7e-36 156.0 119 81.5
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 6.5e-35 152.9 414 51.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 8.5e-35 152.5 467 49.0
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 4.1e-29 133.7 232 39.2
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.3e-27 128.6 109 75.2
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 5.7e-23 113.2 54 98.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 9.5e-18 95.9 321 53.9
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.2e-17 95.5 323 52.0
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.2e-17 95.5 267 30.3
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 3.1e-16 90.9 326 49.7
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.8e-15 86.7 313 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.2e-07 62.4 298 23.8
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 4.4e-07 60.5 120 44.2
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.9e-06 57.8 118 28.8


User provided reference genes

Program Settings