Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 6.3e-70 267.3 135 100.0
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 3.1e-56 221.9 129 86.8
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 5.2e-48 194.5 125 80.8
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 7.5e-47 190.7 133 76.7
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 2.9e-46 188.7 128 78.9
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 2.9e-46 188.7 128 78.9
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 1.1e-45 186.8 129 76.7
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 1.3e-43 179.9 128 75.8
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 1.7e-43 179.5 128 75.8
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 8.1e-41 170.6 128 69.5
BcaB08g35917 Brassica carinata HOM05D007550 ORTHO05D009474 1.4e-37 159.8 124 71.8
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 1.2e-33 146.7 124 64.5
Sp6g17490 Schrenkiella parvula HOM05D007550 ORTHO05D009474 3.6e-33 145.2 100 82.0
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 4.0e-24 115.2 124 52.4
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 5.3e-24 114.8 123 51.2
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 1.5e-23 113.2 82 62.2
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 1.5e-23 113.2 95 58.9
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 2.6e-23 112.5 83 63.9
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 3.4e-23 112.1 101 57.4
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 1.7e-22 109.8 92 56.5
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 1.7e-22 109.8 88 61.4
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 6.4e-22 107.8 112 50.9
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 8.4e-22 107.5 93 53.8
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 8.4e-22 107.5 90 57.8
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 2.4e-21 105.9 84 59.5
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 2.4e-21 105.9 126 48.4
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 3.2e-21 105.5 82 59.8
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 4.2e-21 105.1 122 46.7
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 4.2e-21 105.1 131 48.1
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 5.4e-21 104.8 125 44.8
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 7.1e-21 104.4 126 47.6
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 9.3e-21 104.0 112 47.3
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 9.3e-21 104.0 107 50.5
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 9.3e-21 104.0 115 48.7
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 9.3e-21 104.0 92 53.3
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 9.3e-21 104.0 83 63.9
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 9.3e-21 104.0 124 45.2
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 9.3e-21 104.0 83 60.2
ATR1149G080 Amborella trichopoda HOM05D007550 ORTHO05D009474 1.6e-20 103.2 92 56.5
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 1.6e-20 103.2 73 60.3
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 2.1e-20 102.8 91 52.7
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 2.1e-20 102.8 89 58.4
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 2.7e-20 102.4 84 57.1
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 3.5e-20 102.1 74 60.8
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 3.5e-20 102.1 68 64.7
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 3.5e-20 102.1 129 44.2
DCAR_022604 Daucus carota HOM05D007550 ORTHO05D009474 4.6e-20 101.7 83 59.0
HanXRQChr13g0408011 Helianthus annuus HOM05D007550 ORTHO05D009474 4.6e-20 101.7 70 62.9
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 4.6e-20 101.7 86 53.5
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 6.0e-20 101.3 123 44.7
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 6.0e-20 101.3 86 55.8
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 7.9e-20 100.9 82 57.3
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 7.9e-20 100.9 86 59.3
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 1.0e-19 100.5 77 61.0
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 1.0e-19 100.5 77 61.0
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 1.3e-19 100.1 81 53.1
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 2.3e-19 99.4 71 60.6
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 3.0e-19 99.0 74 60.8
Nitab4.5_0000163g0330 Nicotiana tabacum HOM05D007550 ORTHO05D009474 3.9e-19 98.6 84 57.1
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 5.1e-19 98.2 101 48.5
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 6.7e-19 97.8 75 54.7
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 1.5e-18 96.7 75 54.7
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.5e-18 96.7 75 54.7
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 1.5e-18 96.7 131 45.0
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.9e-18 96.3 75 53.3
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.5e-18 95.9 73 54.8
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 3.3e-18 95.5 72 55.6
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 4.3e-18 95.1 101 47.5
Sopen12g007530 Solanum pennellii HOM05D007550 ORTHO05D009474 4.3e-18 95.1 86 54.7
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 9.6e-18 94.0 72 54.2
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 9.6e-18 94.0 129 43.4
arahy.Tifrunner.gnm1.ann1.S0MYI4 Arachis hypogaea HOM05D007550 ORTHO05D009474 1.3e-17 93.6 81 58.0
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 1.6e-17 93.2 58 70.7
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 1.6e-17 93.2 58 72.4
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 2.1e-17 92.8 58 70.7
arahy.Tifrunner.gnm1.ann1.R7ZLS4 Arachis hypogaea HOM05D007550 ORTHO05D009474 2.8e-17 92.4 81 58.0
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 6.2e-17 91.3 103 44.7
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 1.1e-16 90.5 76 56.6
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 4.0e-16 88.6 100 48.0
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 5.3e-16 88.2 75 48.0
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 1.2e-15 87.0 84 50.0
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 1.5e-15 86.7 119 42.0
Mapoly0128s0022 Marchantia polymorpha HOM05D007550 ORTHO05D009474 5.8e-15 84.7 93 47.3
AagrBONN_evm.TU.Sc2ySwM_344.2781 Anthoceros agrestis HOM05D007550 ORTHO05D009474 9.9e-15 84.0 111 41.4
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 1.7e-14 83.2 93 49.5
CBR_g30607 Chara braunii HOM05D007550 ORTHO05D009474 3.8e-14 82.0 69 50.7
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 8.4e-14 80.9 90 44.4
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 2.7e-12 75.9 74 48.6
Cre03.g145567 Chlamydomonas reinhardtii HOM05D007550 ORTHO05D009474 2.1e-09 66.2 60 50.0
Ah.06g181190 Amaranthus hybridus HOM05D000063 ORTHO05D000906 2.4e-08 62.8 54 53.7
Potri.011G085700 Populus trichocarpa HOM05D007550 ORTHO05D009474 5.3e-08 61.6 80 47.5
vmacro09669 Vaccinium macrocarpon HOM05D007550 ORTHO05D009474 5.3e-08 61.6 73 43.8
MBI16_g11565_MAGBIO Magnolia biondii HOM05D007550 ORTHO05D009474 6.9e-08 61.2 98 42.9
PRCOL_00004706 Prasinoderma coloniale HOM05D007550 ORTHO05D009474 1.2e-07 60.5 58 50.0
EL10Ac4g07615 Beta vulgaris HOM05D007550 ORTHO05D009474 3.4e-07 58.9 81 32.1
Hund01919 Selenicereus undatus HOM05D007550 ORTHO05D009474 2.9e-06 55.8 43 53.5


User provided reference genes

Program Settings