Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 0.0e+00 1089.7 541 100.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.4e-284 981.1 543 89.0
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.1e-281 971.8 545 88.3
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.4e-277 959.1 541 87.6
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 5.9e-276 953.7 541 86.1
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.2e-273 946.0 550 85.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-267 926.0 548 83.9
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 5.7e-263 910.6 543 84.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-261 906.0 544 82.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.6e-260 902.5 543 84.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.7e-251 872.5 541 80.0
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 2.0e-247 859.0 545 80.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 5.1e-219 764.6 537 70.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 8.7e-195 684.1 541 65.6
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 4.3e-194 681.8 446 76.9
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.3e-194 681.8 549 62.8
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 3.7e-193 678.7 537 61.3
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.0e-192 674.1 543 62.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.2e-189 665.6 544 63.1
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 4.6e-188 661.8 549 63.6
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.6e-188 661.8 543 62.8
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.6e-188 661.8 543 62.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 7.9e-188 661.0 541 60.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.3e-187 659.4 550 62.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.3e-187 659.4 544 60.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.1e-187 658.3 543 63.0
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 6.7e-187 657.9 547 61.8
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 8.7e-187 657.5 548 63.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 8.7e-187 657.5 571 59.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.9e-186 656.4 539 61.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.9e-186 656.4 544 61.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.9e-186 656.4 544 61.6
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.9e-186 656.4 571 58.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-186 656.0 535 62.4
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.5e-186 656.0 535 62.4
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 7.4e-186 654.4 540 61.5
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.3e-185 653.7 545 61.5
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.3e-185 653.7 540 61.3
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.1e-185 652.9 540 61.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 2.1e-185 652.9 542 60.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.8e-185 652.5 547 60.3
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.8e-185 652.5 545 60.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 4.8e-185 651.7 540 60.7
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 4.8e-185 651.7 541 62.1
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 8.2e-185 651.0 542 62.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.4e-184 650.2 554 60.8
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.4e-184 650.2 556 59.7
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.1e-184 649.0 545 61.7
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.3e-184 648.3 549 60.3
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.0e-183 646.4 542 62.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.6e-183 646.0 541 58.6
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.6e-183 646.0 543 61.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-183 645.6 535 61.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-183 645.6 535 61.9
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 4.5e-183 645.2 565 58.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.3e-182 643.7 549 58.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.3e-182 643.7 545 59.6
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.8e-182 642.1 565 60.5
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 3.8e-182 642.1 565 60.5
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-181 639.0 539 61.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 3.2e-181 639.0 563 58.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 9.3e-181 637.5 556 59.4
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 9.3e-181 637.5 564 58.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.1e-180 636.3 560 58.8
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.7e-180 636.0 538 60.8
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.6e-180 635.2 553 59.3
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.9e-180 634.4 482 65.8
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.0e-179 634.0 543 60.4
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.9e-179 632.1 547 60.1
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 5.1e-179 631.7 543 58.9
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.1e-178 630.6 546 61.2
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.3e-178 629.0 552 58.2
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.4e-178 627.9 514 61.9
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.3e-177 627.1 539 56.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 3.7e-177 625.5 539 59.9
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 4.8e-177 625.2 570 58.9
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 8.2e-177 624.4 562 56.4
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.8e-176 623.2 541 58.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.8e-176 623.2 539 59.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.4e-176 622.9 541 58.8
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.4e-176 622.9 540 58.1
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.2e-175 620.5 493 62.3
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.6e-175 619.4 537 59.2
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 7.7e-175 617.8 554 57.4
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.7e-175 617.8 543 60.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.7e-174 616.7 530 58.5
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.5e-173 612.8 541 56.6
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-172 609.8 561 56.3
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-171 607.1 568 57.4
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.8e-171 606.7 554 59.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-170 603.6 554 58.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.6e-170 602.8 544 56.4
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.1e-168 597.4 480 60.6
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.8e-168 596.7 552 54.7
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 4.1e-168 595.5 535 56.8
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 6.9e-168 594.7 534 57.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 5.0e-166 588.6 542 58.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 5.0e-166 588.6 540 56.5
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.6e-164 583.6 481 60.1
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.5e-162 577.0 498 57.8
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.8e-161 572.0 493 56.8
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.6e-159 566.2 479 56.6
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.7e-159 564.7 485 56.9
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 5.0e-158 562.0 481 59.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-156 557.4 539 51.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.6e-156 557.0 553 53.5
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.4e-155 553.9 431 63.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.5e-154 550.4 497 57.3
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 4.1e-152 542.3 466 60.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 8.5e-150 534.6 419 64.0
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.5e-149 533.1 459 57.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.7e-143 511.5 407 61.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-141 507.3 490 53.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-134 484.2 559 54.7
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.2e-132 477.6 321 69.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 4.7e-132 475.7 321 70.4
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.4e-131 474.2 301 74.8
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.5e-125 454.1 321 66.4
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.1e-124 450.3 313 68.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.3e-117 426.4 495 43.0
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 8.1e-116 421.8 298 66.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 7.5e-114 415.2 407 53.3
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 4.6e-111 406.0 537 41.5
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.2e-108 397.9 598 38.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-107 394.8 359 61.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.9e-97 360.1 251 68.1
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.1e-96 358.2 256 68.8
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-94 351.3 285 67.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.3e-94 351.3 248 67.7
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.7e-79 300.4 301 52.5
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.0e-78 298.5 272 61.8
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 5.1e-78 296.2 207 67.6
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-78 295.8 272 61.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 7.6e-74 282.3 209 65.1
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.2e-73 280.8 227 62.1
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 6.0e-71 272.7 195 73.3
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 6.3e-60 236.1 176 68.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-58 230.7 129 79.1
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.6e-58 230.7 129 79.1
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-57 228.8 124 81.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 5.2e-46 189.9 106 77.4
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-45 188.3 465 28.6
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.2e-44 184.5 201 46.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 6.3e-44 183.0 243 44.0
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.7e-37 159.8 101 75.2
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-35 154.1 192 46.9
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 4.1e-35 153.7 246 36.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 9.1e-35 152.5 76 88.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 9.1e-35 152.5 76 88.2
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.2e-34 152.1 173 47.4
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.5e-34 150.2 280 34.3
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 8.5e-33 146.0 85 75.3
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 4.7e-31 140.2 174 45.4
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.0e-30 139.0 181 45.3
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.0e-30 139.0 109 66.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.1e-27 129.0 189 43.4
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-27 129.0 120 53.3
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.1e-27 127.5 98 61.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 3.5e-26 124.0 72 84.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.0e-22 110.9 97 57.7
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-20 105.5 59 76.3
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 2.9e-12 77.8 51 70.6
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 2.9e-12 77.8 51 70.6
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.6e-10 72.0 105 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.0e-09 69.3 222 27.9
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 1.9e-08 65.1 62 53.2
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.2e-07 62.4 34 88.2


User provided reference genes

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