Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 2.1e-35 151.8 74 100.0
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 7.3e-20 100.1 81 66.7
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 8.1e-19 96.7 84 64.3
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 1.8e-18 95.5 81 65.4
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 2.4e-18 95.1 81 65.4
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 5.3e-18 94.0 81 64.2
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 6.9e-18 93.6 81 64.2
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 6.9e-18 93.6 81 64.2
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 6.9e-18 93.6 81 64.2
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 6.9e-18 93.6 76 68.4
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 2.0e-17 92.0 81 63.0
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 1.3e-16 89.4 81 61.7
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 6.4e-16 87.0 81 55.6
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 1.4e-15 85.9 71 62.0
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 2.4e-15 85.1 73 60.3
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 2.4e-15 85.1 71 62.0
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 3.2e-15 84.7 72 58.3
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 5.4e-15 84.0 73 58.9
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 7.1e-15 83.6 73 60.3
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 7.1e-15 83.6 79 53.2
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.2e-14 82.8 80 52.5
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 4.6e-14 80.9 83 47.0
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 4.6e-14 80.9 83 47.0
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 4.6e-14 80.9 73 56.2
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 4.6e-14 80.9 74 54.1
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 7.9e-14 80.1 65 61.5
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 1.0e-13 79.7 74 58.1
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 1.0e-13 79.7 72 55.6
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 1.3e-13 79.3 72 55.6
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 2.3e-13 78.6 81 51.9
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 2.3e-13 78.6 72 56.9
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 3.0e-13 78.2 76 52.6
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 3.0e-13 78.2 73 56.2
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 3.9e-13 77.8 85 55.3
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 6.7e-13 77.0 75 54.7
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 6.7e-13 77.0 79 51.9
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 8.7e-13 76.6 73 53.4
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 1.1e-12 76.3 72 54.2
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 1.1e-12 76.3 77 50.6
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.9e-12 75.5 73 56.2
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 2.5e-12 75.1 72 55.6
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 2.5e-12 75.1 84 51.2
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 2.5e-12 75.1 84 52.4
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.5e-12 75.1 74 51.4
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.5e-12 75.1 74 51.4
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 4.3e-12 74.3 78 50.0
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 7.4e-12 73.6 68 51.5
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 7.4e-12 73.6 71 56.3
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.3e-11 72.8 77 49.4
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.3e-11 72.8 77 49.4
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 1.3e-11 72.8 74 54.1
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.1e-11 72.0 71 54.9
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 2.1e-11 72.0 84 46.4
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 2.8e-11 71.6 72 52.8
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 2.8e-11 71.6 72 52.8
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.8e-11 71.6 71 54.9
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 2.8e-11 71.6 74 51.4
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 2.8e-11 71.6 72 51.4
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 3.7e-11 71.2 71 50.7
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 3.7e-11 71.2 71 50.7
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 4.8e-11 70.9 71 50.7
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 6.2e-11 70.5 70 50.0
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 6.2e-11 70.5 76 50.0
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 6.2e-11 70.5 76 50.0
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 8.1e-11 70.1 71 52.1
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.1e-10 69.7 64 56.2
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 3.1e-10 68.2 71 53.5
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 4.0e-10 67.8 71 47.9
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 9.0e-10 66.6 34 82.4
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 9.0e-10 66.6 34 82.4
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 9.0e-10 66.6 84 48.8
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.2e-09 66.2 36 77.8
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 8.4e-08 60.1 76 44.7
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 1.9e-07 58.9 71 47.9
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 3.2e-07 58.2 34 73.5
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.2e-06 56.2 66 43.9
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 1.6e-06 55.8 58 48.3
Medtr3g018660 Medicago truncatula HOM05D007721 ORTHO05D009811 6.0e-06 53.9 27 88.9


User provided reference genes

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