Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.8e-102 375.9 187 100.0
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 3.9e-102 374.8 187 99.5
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 5.1e-102 374.4 187 98.9
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 6.7e-102 374.0 187 99.5
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 8.7e-102 373.6 187 98.9
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 1.5e-101 372.9 187 98.4
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 2.5e-101 372.1 187 98.4
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 2.5e-101 372.1 187 98.4
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 2.5e-101 372.1 187 98.4
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 2.5e-101 372.1 187 98.4
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.3e-101 371.3 187 98.4
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 5.6e-101 370.9 187 97.9
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 94.7
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 1.0e-97 360.1 206 88.8
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 93.6
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 8.4e-97 357.1 186 93.0
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 93.0
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 92.5
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.5
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 92.0
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.4
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.4
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.4
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.0
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 89.8
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 89.3
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 89.8
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 89.8
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 90.4
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.9
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.7e-95 352.1 183 93.4
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 90.9
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 89.3
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 91.4
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.4
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 89.8
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.8
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.4
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 89.3
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 90.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 90.9
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 90.4
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 89.3
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.9
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.9
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 89.3
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 89.3
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 6.7e-94 347.4 184 90.8
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 88.2
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.8
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.3
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.3
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.5e-93 345.5 200 84.5
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.5e-93 345.5 185 90.3
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.8
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 89.3
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.8
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.8
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.8
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 87.7
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 87.7
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-92 343.2 196 86.7
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 87.7
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.2
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 88.2
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 88.2
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.2
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.2
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 88.2
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 86.6
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.2
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 6.2e-92 340.9 193 87.6
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 87.2
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 86.1
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 88.2
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 87.2
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 87.7
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 86.6
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 2.4e-91 339.0 187 87.7
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.4e-91 339.0 186 87.6
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 86.6
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 86.6
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.6
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 86.6
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 3.4e-90 335.1 187 87.2
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 85.0
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 83.4
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.0e-89 333.6 187 85.0
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 1.0e-89 333.6 201 82.1
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.0e-89 333.6 203 81.8
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 1.0e-89 333.6 186 87.1
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 84.0
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 85.0
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 3.8e-89 331.6 187 85.6
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.8e-89 331.6 208 78.8
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 3.8e-89 331.6 185 84.9
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 84.5
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 83.4
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 6.5e-89 330.9 187 85.0
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 8.4e-89 330.5 185 84.3
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 1.1e-88 330.1 181 86.7
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.4e-88 329.7 183 85.8
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.4e-88 329.7 183 85.8
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.9e-88 329.3 206 79.6
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 9.3e-88 327.0 187 84.5
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 1.3e-86 323.2 183 84.7
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 8.7e-86 320.5 186 81.2
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.1e-85 320.1 187 81.8
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 9.7e-85 317.0 241 67.6
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.1e-83 313.5 169 88.2
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 3.1e-83 312.0 186 87.6
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 6.9e-83 310.8 211 75.4
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 9.0e-83 310.5 178 84.3
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 3.4e-82 308.5 173 83.2
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.0e-81 307.0 154 98.1
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.2e-81 305.8 185 77.3
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 4.2e-80 301.6 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-79 299.7 187 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-79 299.7 187 77.0
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.0e-78 295.4 187 75.9
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 5.7e-77 291.2 187 79.1
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-75 285.8 172 78.5
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 6.9e-75 284.3 187 72.7
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 9.1e-75 283.9 187 75.4
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 4.5e-74 281.6 158 86.1
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.3e-73 280.0 149 90.6
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.2e-73 279.3 187 74.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.6e-71 271.9 180 70.0
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.7e-71 271.6 187 72.2
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.5e-69 266.5 187 72.7
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 4.4e-69 265.0 148 85.1
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.7e-68 263.1 214 60.3
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.2e-64 248.4 124 100.0
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.2e-63 246.9 158 75.3
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 5.2e-62 241.5 187 67.9
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 1.3e-60 236.9 185 59.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 5.3e-59 231.5 187 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.4e-53 211.8 133 75.9
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 9.1e-51 204.1 103 92.2
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 2.7e-50 202.6 167 55.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.2e-47 193.7 98 90.8
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.6e-47 193.4 175 53.7
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.7e-47 192.6 106 85.8
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 3.0e-46 189.1 102 86.3
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 6.3e-44 181.4 103 80.6
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.4e-43 179.5 181 56.4
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 2.7e-42 176.0 98 83.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 9.8e-37 157.5 85 90.6
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 8.3e-28 127.9 142 53.5
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.2e-20 103.2 68 67.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 4.1e-19 99.0 52 92.3
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 4.6e-18 95.5 52 90.4
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.0e-17 94.4 49 93.9
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 1.4e-14 84.0 45 88.9
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.7e-12 77.0 41 87.8
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.2e-12 76.6 41 87.8
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 2.2e-12 76.6 47 78.7
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 8.4e-12 74.7 70 60.0
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.9e-11 73.6 39 84.6
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.4e-11 73.2 68 54.4


User provided reference genes

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