Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 4.4e-153 544.7 292 100.0
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.9e-133 478.4 300 88.3
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.5e-127 459.1 301 85.7
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 2.6e-113 412.5 305 78.0
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 2.5e-103 379.4 311 71.7
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 2.3e-101 372.9 305 71.8
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 2.0e-89 333.2 306 66.7
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 1.7e-88 330.1 304 66.1
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 5.0e-88 328.6 308 66.6
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 3.2e-87 325.9 307 66.8
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 2.1e-86 323.2 304 64.5
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.7e-86 322.8 304 64.1
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.0e-85 320.9 304 64.1
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 2.2e-83 313.2 317 60.9
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 1.2e-81 307.4 322 61.8
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 2.7e-81 306.2 308 62.7
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.7e-72 276.9 290 59.7
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 2.0e-68 263.5 325 54.5
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.9e-39 167.2 336 38.7
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 4.0e-37 159.5 327 37.9
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 5.3e-37 159.1 345 39.1
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 7.6e-36 155.2 311 37.9
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 4.9e-35 152.5 311 37.6
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 4.9e-35 152.5 338 39.3
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 8.4e-35 151.8 311 37.6
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.1e-34 151.4 335 39.1
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 1.1e-34 151.4 341 37.5
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 5.4e-34 149.1 326 39.0
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 1.6e-33 147.5 310 39.0
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.1e-33 147.1 332 36.4
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 2.7e-33 146.7 330 38.5
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.0e-32 144.8 321 35.2
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 2.3e-32 143.7 310 36.1
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 2.3e-32 143.7 328 36.0
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.0e-32 143.3 321 35.2
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 3.0e-32 143.3 321 37.1
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.1e-32 142.5 321 34.9
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 5.1e-32 142.5 338 38.5
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 5.1e-32 142.5 318 35.8
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 1.1e-31 141.4 337 37.7
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.1e-31 141.4 321 35.2
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.5e-31 140.2 342 35.1
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 3.3e-31 139.8 310 35.2
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 4.3e-31 139.4 337 37.7
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 4.3e-31 139.4 329 35.0
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 9.6e-31 138.3 357 34.7
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.3e-30 137.9 327 37.6
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 1.6e-30 137.5 326 35.9
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.6e-30 137.5 325 36.9
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.6e-30 137.5 348 33.3
BolC2t07792H Brassica oleracea HOM05D003841 ORTHO05D004602 2.8e-30 136.7 256 39.8
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.7e-30 136.3 294 38.4
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 8.1e-30 135.2 323 36.8
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 8.1e-30 135.2 320 35.6
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.1e-29 134.8 340 37.4
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.4e-29 134.4 324 35.5
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.8e-29 134.0 333 38.1
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 1.8e-29 134.0 323 35.6
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.4e-29 133.7 315 36.5
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 6.9e-29 132.1 326 34.4
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 6.9e-29 132.1 314 36.9
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 9.0e-29 131.7 322 37.0
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 1.2e-28 131.3 340 36.8
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.0e-28 130.6 327 35.5
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 3.4e-28 129.8 335 35.8
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 5.8e-28 129.0 316 35.1
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 5.8e-28 129.0 349 36.4
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 9.9e-28 128.3 335 34.9
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.2e-27 127.1 337 33.8
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 2.9e-27 126.7 336 36.6
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 3.8e-27 126.3 331 35.3
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.8e-27 126.3 352 33.8
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 6.4e-27 125.6 218 42.2
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 8.4e-27 125.2 315 34.0
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 8.4e-27 125.2 329 37.1
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 8.4e-27 125.2 329 37.1
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 8.4e-27 125.2 317 34.1
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.1e-26 124.8 316 34.2
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.4e-26 124.4 339 34.5
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.9e-26 124.0 316 35.4
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 2.4e-26 123.6 323 35.9
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 3.2e-26 123.2 304 33.9
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 4.2e-26 122.9 331 34.4
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 4.2e-26 122.9 323 33.1
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.2e-26 122.9 320 35.3
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 5.5e-26 122.5 345 32.8
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 9.3e-26 121.7 332 34.3
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.2e-25 121.3 332 33.7
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 2.1e-25 120.6 325 33.5
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 4.6e-25 119.4 285 36.1
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 6.0e-25 119.0 351 34.2
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 7.9e-25 118.6 307 35.8
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.8e-24 117.5 325 35.7
BcaC03g14305 Brassica carinata HOM05D003841 ORTHO05D004602 2.3e-24 117.1 232 38.4
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.3e-24 117.1 321 34.0
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 6.7e-24 115.5 328 33.2
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.1e-23 114.8 327 34.9
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.5e-23 114.4 351 33.0
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.9e-23 114.0 312 34.0
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.5e-23 113.6 326 31.9
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.5e-23 113.6 321 32.7
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 4.3e-23 112.8 312 32.7
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 5.6e-23 112.5 312 35.6
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 7.4e-23 112.1 317 33.4
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 7.4e-23 112.1 309 34.0
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 7.4e-23 112.1 318 32.4
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.6e-22 110.9 326 32.2
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 2.1e-22 110.5 323 34.7
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 4.8e-22 109.4 313 32.3
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 8.2e-22 108.6 337 33.2
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.2e-22 108.6 315 33.0
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 8.2e-22 108.6 221 36.2
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 1.4e-21 107.8 300 33.7
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 3.1e-21 106.7 227 40.1
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.0e-21 105.1 317 33.4
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 1.2e-20 104.8 362 32.3
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 1.2e-20 104.8 315 30.8
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 1.2e-20 104.8 314 36.0
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.5e-20 104.4 242 37.2
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.5e-20 104.4 323 31.0
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 2.0e-20 104.0 325 33.5
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 2.6e-20 103.6 347 34.9
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 4.5e-20 102.8 332 31.9
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 7.6e-20 102.1 346 34.4
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 2.2e-19 100.5 277 31.4
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 6.5e-19 99.0 322 34.5
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 6.5e-19 99.0 319 32.3
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 7.1e-18 95.5 312 32.4
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.2e-17 94.7 192 44.3
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 2.7e-17 93.6 310 30.6
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.9e-15 87.4 343 28.9
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 4.3e-15 86.3 472 27.5
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 5.7e-15 85.9 124 44.4
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 9.7e-15 85.1 271 29.2
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 9.7e-15 85.1 315 30.2
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 9.7e-15 85.1 336 30.7
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 2.1e-14 84.0 331 29.6
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.8e-14 83.6 354 32.2
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 3.7e-14 83.2 309 29.1
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 3.7e-14 83.2 211 34.1
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 4.8e-14 82.8 185 33.0
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 4.8e-14 82.8 239 30.1
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 8.2e-14 82.0 329 29.8
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.8e-13 80.9 197 35.5
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 9.0e-13 78.6 325 29.5
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 3.4e-12 76.6 210 28.1
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.9e-12 75.9 249 30.5
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 1.0e-11 75.1 328 29.3
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 1.3e-11 74.7 239 31.0
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 1.7e-11 74.3 197 33.5
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 5.0e-11 72.8 211 32.7
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 8.5e-11 72.0 188 31.9
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.1e-10 71.6 117 46.2
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.4e-10 71.2 243 29.6
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 3.2e-10 70.1 127 48.8
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 4.2e-10 69.7 212 27.8
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 1.6e-09 67.8 162 34.6
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.3e-08 64.7 151 33.8
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 5.1e-08 62.8 206 31.1
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 8.7e-08 62.0 295 28.5
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.5e-07 61.2 293 25.6
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.9e-07 60.8 332 24.7
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.6e-06 57.8 106 45.3
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 6.3e-06 55.8 232 24.6


User provided reference genes

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