Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.9e-160 568.5 292 100.0
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.4e-151 539.7 291 94.2
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 7.1e-151 537.3 291 93.8
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.6e-150 534.6 291 94.5
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 7.9e-150 533.9 291 93.8
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 2.5e-148 528.9 293 93.5
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 2.5e-148 528.9 293 93.5
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 4.3e-148 528.1 293 93.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 2.0e-145 519.2 293 92.2
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.4e-143 512.3 293 91.5
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 8.7e-141 503.8 280 92.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.0e-138 495.0 293 87.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.9e-126 454.1 291 79.0
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.9e-126 454.1 294 78.9
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 8.2e-123 444.1 291 78.4
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.4e-122 442.6 295 76.3
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 6.9e-122 441.0 291 76.3
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.4e-121 438.7 291 77.3
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.4e-121 438.7 291 77.3
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.2e-120 436.0 291 77.0
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 2.9e-120 435.6 295 74.9
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 3.8e-120 435.3 291 77.0
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 6.5e-120 434.5 291 78.0
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 6.5e-120 434.5 293 75.8
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 8.5e-120 434.1 287 76.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 8.5e-120 434.1 291 75.9
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 3.2e-119 432.2 291 77.7
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.2e-119 432.2 295 74.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.2e-119 431.8 291 78.0
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 4.2e-119 431.8 292 74.7
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.2e-119 431.8 291 75.9
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.2e-119 431.8 291 76.3
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 7.2e-119 431.0 291 76.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 9.4e-119 430.6 291 77.3
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 9.4e-119 430.6 291 75.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.4e-119 430.6 295 73.9
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.2e-118 430.3 291 75.9
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.2e-118 430.3 297 73.7
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.7e-118 429.1 292 77.1
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 3.6e-118 428.7 292 77.4
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 6.1e-118 427.9 292 77.1
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 7.9e-118 427.6 292 77.1
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.9e-118 427.6 291 75.3
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.0e-117 427.2 296 74.0
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.4e-117 426.8 291 76.3
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 6.7e-117 424.5 292 76.0
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 8.8e-117 424.1 294 73.1
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.1e-116 423.7 294 74.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.5e-116 423.3 291 76.6
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 5.7e-116 421.4 292 75.7
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 9.7e-116 420.6 291 74.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 9.7e-116 420.6 291 74.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 9.7e-116 420.6 291 74.9
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 4.8e-115 418.3 297 71.7
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 4.8e-115 418.3 291 73.5
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 6.3e-115 417.9 292 72.6
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 6.3e-115 417.9 292 72.6
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.1e-114 417.2 295 73.2
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 71.9
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 3.1e-114 415.6 282 77.3
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 4.1e-114 415.2 282 77.3
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 6.9e-114 414.5 282 77.3
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 9.1e-114 414.1 292 74.7
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.2e-113 413.7 291 72.9
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.2e-113 413.7 292 72.3
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.0e-113 412.9 292 72.6
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.0e-113 412.9 292 72.6
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.6e-113 412.5 296 73.0
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 3.4e-113 412.1 291 73.2
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 4.5e-113 411.8 296 72.6
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.0e-112 410.6 292 72.3
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.3e-112 410.2 295 71.2
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.3e-112 410.2 292 72.9
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.3e-112 410.2 291 73.2
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.7e-112 409.8 292 74.3
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.9e-112 409.1 294 72.1
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 2.9e-112 409.1 292 71.6
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.9e-112 409.1 291 71.8
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.9e-112 409.1 291 71.8
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.9e-112 409.1 292 72.6
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.0e-112 408.3 292 73.3
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 8.5e-112 407.5 291 72.2
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.5e-111 406.0 291 70.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 5.5e-111 404.8 292 69.2
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 7.2e-111 404.4 296 71.6
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 7.2e-111 404.4 292 69.2
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 9.4e-111 404.1 292 71.9
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.6e-110 403.3 293 72.7
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 2.1e-110 402.9 291 70.4
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.1e-110 402.9 291 70.4
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.7e-110 402.5 297 70.7
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.6e-110 402.1 293 72.4
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 4.7e-110 401.7 291 69.8
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.7e-110 401.7 293 72.7
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.1e-110 401.4 291 70.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.0e-109 400.6 295 70.2
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.4e-109 400.2 295 69.5
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.8e-109 399.8 292 71.9
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.0e-109 399.1 291 70.1
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.9e-109 398.7 291 71.8
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 6.7e-109 397.9 293 71.3
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 6.7e-109 397.9 293 69.3
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 6.7e-109 397.9 286 72.4
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 8.8e-109 397.5 280 75.4
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 8.8e-109 397.5 283 71.0
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 4.4e-108 395.2 293 70.0
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 5.7e-108 394.8 293 68.6
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 7.4e-108 394.4 285 70.5
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 9.7e-108 394.0 299 69.6
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.3e-107 393.7 293 70.0
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.7e-107 393.3 299 70.2
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 8.2e-107 391.0 296 70.9
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.8e-106 389.8 283 72.1
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.4e-106 389.4 293 71.0
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 7.0e-106 387.9 293 70.0
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 7.0e-106 387.9 297 67.7
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 4.5e-105 385.2 297 67.3
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 7.7e-105 384.4 291 68.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-104 384.0 283 68.9
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.3e-104 383.6 215 92.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 6.5e-104 381.3 295 69.5
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 6.5e-104 381.3 294 68.4
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.1e-103 380.6 294 68.4
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 9.4e-103 377.5 273 71.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.0e-101 374.0 287 69.7
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.7e-101 371.3 288 66.7
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.1e-100 370.5 297 67.3
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.3e-100 369.0 286 66.1
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 3.3e-100 369.0 296 64.9
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.8e-99 365.9 296 66.2
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 9.1e-98 360.9 293 67.9
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 7.2e-95 351.3 292 65.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.6e-94 350.1 304 62.2
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 8.0e-94 347.8 294 65.3
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.4e-93 347.1 296 64.5
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.4e-92 342.0 303 63.0
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.7e-91 340.1 303 62.4
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 2.8e-91 339.3 299 60.9
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.8e-91 339.3 297 63.0
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 4.8e-91 338.6 296 62.8
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 4.8e-91 338.6 296 61.8
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 5.4e-90 335.1 262 66.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.6e-86 322.4 249 68.3
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 3.0e-85 319.3 293 59.4
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 7.7e-81 304.7 283 58.0
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 4.3e-79 298.9 280 57.9
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-74 284.3 279 55.9
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 4.6e-73 278.9 267 56.6
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 2.0e-68 263.5 196 72.4
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 3.7e-59 232.6 143 79.7
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 6.4e-59 231.9 275 46.9
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 4.1e-58 229.2 279 50.2
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 4.1e-58 229.2 266 52.6
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 5.1e-48 195.7 126 73.0
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 5.1e-48 195.7 152 65.1
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 6.6e-48 195.3 168 63.7
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 3.2e-42 176.4 146 65.8
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 9.0e-29 131.7 105 68.6
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 2.1e-25 120.6 332 27.4
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.3e-22 111.3 110 57.3
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.8e-21 107.5 110 56.4
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 6.9e-21 105.5 71 73.2
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 9.3e-18 95.1 100 57.0
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-13 81.6 71 56.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.0e-08 65.1 86 45.3
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 4.3e-07 59.7 73 49.3
DCAR_021512 Daucus carota HOM05D005748 ORTHO05D007123 2.8e-06 57.0 130 35.4
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 6.3e-06 55.8 77 45.5


User provided reference genes

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