Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 6.0e-120 434.9 355 100.0
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 7.9e-104 381.3 357 89.1
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 9.1e-100 367.9 356 90.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 4.8e-93 345.5 361 87.0
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.4e-92 344.0 359 86.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.7e-90 337.0 175 97.1
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.7e-90 337.0 175 97.1
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.1e-89 334.3 361 86.1
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 4.7e-88 328.9 358 86.6
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.4e-87 327.4 358 86.9
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.4e-87 327.4 358 86.9
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 8.5e-82 308.1 391 78.3
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.2e-75 287.7 174 81.6
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.6e-70 270.0 175 75.4
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 4.4e-70 269.2 174 78.2
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 4.4e-70 269.2 174 77.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.4e-70 269.2 171 78.9
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 4.4e-70 269.2 174 77.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 4.8e-69 265.8 175 76.0
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 6.3e-69 265.4 174 76.4
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 6.3e-69 265.4 174 76.4
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 8.3e-69 265.0 171 77.8
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 1.1e-68 264.6 174 77.6
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.1e-68 264.6 174 74.7
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.8e-68 263.8 174 76.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.8e-68 263.8 174 75.3
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.4e-68 263.5 174 75.9
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 4.1e-68 262.7 171 74.9
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 4.1e-68 262.7 171 77.2
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 5.4e-68 262.3 169 77.5
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 5.4e-68 262.3 167 78.4
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 9.1e-68 261.5 167 77.8
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 9.1e-68 261.5 174 75.3
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.2e-67 261.2 175 74.3
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 2.7e-67 260.0 173 74.6
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 3.5e-67 259.6 171 77.8
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.5e-67 259.2 167 77.2
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.9e-67 258.8 171 75.4
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 5.9e-67 258.8 174 73.0
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 7.7e-67 258.5 172 77.3
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.0e-66 258.1 174 74.1
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.0e-66 258.1 174 72.4
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.0e-66 258.1 174 72.4
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.3e-66 257.7 174 74.7
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.3e-66 257.7 171 75.4
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.3e-66 257.7 170 75.3
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 1.7e-66 257.3 174 72.4
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 2.3e-66 256.9 174 74.1
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.9e-66 256.5 174 71.8
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 5.0e-66 255.8 174 73.6
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 5.0e-66 255.8 171 74.3
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 6.6e-66 255.4 174 73.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 6.6e-66 255.4 171 73.7
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.1e-65 254.6 170 72.4
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.9e-65 253.8 174 74.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 3.3e-65 253.1 174 72.4
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 5.5e-65 252.3 171 74.9
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 5.5e-65 252.3 170 73.5
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 7.2e-65 251.9 171 72.5
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 9.5e-65 251.5 174 73.6
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 9.5e-65 251.5 171 71.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 9.5e-65 251.5 171 73.1
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.1e-64 250.4 171 74.3
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 2.1e-64 250.4 170 72.9
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 1.8e-63 247.3 175 71.4
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 2.3e-63 246.9 167 72.5
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 2.3e-63 246.9 173 72.3
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 8.9e-63 245.0 168 72.6
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 8.9e-63 245.0 168 72.6
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.0e-62 243.8 171 71.9
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.3e-61 241.1 168 73.2
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 6.3e-61 238.8 206 63.6
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.4e-60 237.7 170 69.4
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.0e-59 233.8 171 70.8
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 4.5e-59 232.6 171 71.3
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.9e-58 229.9 171 70.2
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 6.6e-58 228.8 171 66.1
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.1e-57 228.0 220 57.7
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.9e-57 227.3 171 65.5
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 2.5e-57 226.9 160 73.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 5.6e-57 225.7 174 66.7
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 5.6e-57 225.7 168 66.1
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 4.7e-56 222.6 174 65.5
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.8e-55 220.7 150 74.0
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 2.3e-55 220.3 169 67.5
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 4.0e-55 219.5 155 71.0
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 2.0e-54 217.2 155 71.6
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 3.4e-54 216.5 149 72.5
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 4.4e-54 216.1 193 60.1
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.9e-52 210.7 166 62.0
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 5.4e-52 209.1 192 59.4
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.7e-51 206.8 152 70.4
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.3e-50 204.5 168 62.5
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 8.6e-50 201.8 150 69.3
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 2.5e-49 200.3 175 61.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.4e-44 184.5 149 61.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.4e-44 183.7 131 68.7
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.4e-39 167.9 118 73.7
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 3.1e-31 140.2 105 70.5
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 6.8e-31 139.0 105 69.5
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 1.3e-29 134.8 71 85.9
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.1e-27 127.5 169 42.6
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.7e-27 127.1 75 88.0
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 4.6e-27 126.3 93 74.2
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.7e-26 124.4 124 58.9
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.3e-25 120.2 65 84.6
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 6.2e-24 115.9 69 76.8
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 1.4e-23 114.8 178 37.6
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.1e-20 105.1 92 60.9
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 3.5e-19 100.1 66 63.6
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 6.9e-15 85.9 89 55.1
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.8e-13 80.1 78 60.3
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 8.4e-13 79.0 78 59.0
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.4e-12 78.2 64 65.6
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 3.2e-12 77.0 69 62.3
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.1e-08 64.3 51 64.7
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.1e-07 62.0 32 81.2
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 6.9e-07 59.3 67 49.3
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 3.4e-06 57.0 40 67.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 5.8e-06 56.2 36 63.9


User provided reference genes

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