Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 0.0e+00 1270.8 694 100.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.6e-286 989.2 704 80.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 4.3e-271 937.9 706 78.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.4e-269 932.9 704 77.0
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 7.6e-268 927.2 703 78.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 6.2e-262 907.5 714 75.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 7.9e-257 890.6 683 76.4
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.8e-232 809.7 699 70.2
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.2e-227 792.7 700 69.0
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.9e-218 763.1 690 66.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 4.7e-217 758.4 686 65.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 5.2e-216 755.0 695 65.5
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 4.2e-210 735.3 690 64.6
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.7e-209 732.6 726 63.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.8e-206 722.6 695 63.7
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 4.7e-193 678.7 687 64.2
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 3.5e-188 662.5 662 59.8
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 7.3e-162 575.1 747 49.7
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.7e-161 572.4 756 51.5
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 4.7e-161 572.4 763 51.1
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 5.2e-160 568.9 761 51.2
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 3.2e-157 559.7 755 49.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.0e-155 554.7 755 49.4
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.0e-155 553.1 769 48.9
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.9e-154 550.4 765 49.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.3e-154 549.3 769 49.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.3e-154 548.5 756 51.5
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 9.6e-154 548.1 746 50.0
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 9.6e-154 548.1 738 51.4
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.7e-153 545.8 767 49.3
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-152 543.9 748 49.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.8e-152 543.9 749 49.9
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.6e-151 540.0 746 48.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.7e-150 537.3 738 49.1
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 6.4e-150 535.4 775 48.4
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-148 530.8 745 50.2
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.3e-147 526.9 758 50.4
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.0e-147 526.6 748 50.1
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.0e-147 526.6 752 46.9
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.6e-147 525.4 758 50.4
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-146 524.2 613 54.2
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.3e-146 522.7 747 48.3
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.6e-145 520.8 748 46.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.1e-145 520.4 748 46.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.1e-145 520.4 746 49.6
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.8e-145 520.0 745 48.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.6e-145 519.6 756 48.7
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.8e-145 519.2 748 49.7
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 8.1e-145 518.5 755 46.4
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 2.4e-144 516.9 798 45.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 4.0e-144 516.2 759 47.0
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.5e-143 514.2 753 46.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 5.8e-143 512.3 729 48.8
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 5.8e-143 512.3 753 47.9
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 9.9e-143 511.5 729 48.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 9.9e-143 511.5 754 47.7
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 2.2e-142 510.4 749 46.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 3.8e-142 509.6 769 46.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.9e-142 509.2 753 47.9
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.4e-141 506.9 751 45.0
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.5e-140 503.1 677 52.1
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 3.5e-140 503.1 704 49.1
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 7.9e-140 501.9 748 45.1
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.8e-139 500.7 745 46.8
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.3e-139 500.4 740 47.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 6.7e-139 498.8 753 47.7
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 5.6e-138 495.7 760 45.1
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 9.6e-138 495.0 750 48.4
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.3e-137 494.6 765 47.7
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 1.6e-137 494.2 719 47.1
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-137 493.0 754 46.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-136 491.5 762 47.0
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.8e-136 490.7 742 47.4
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.0e-136 489.6 757 46.5
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 6.9e-136 488.8 746 48.7
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.5e-135 487.6 751 44.6
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 1.7e-134 484.2 745 47.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.4e-133 480.3 818 43.0
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.2e-133 479.9 680 46.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 3.2e-133 479.9 768 47.3
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 7.1e-133 478.8 729 45.5
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 9.3e-133 478.4 740 47.0
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.2e-132 478.0 649 50.8
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 7.9e-132 475.3 724 47.8
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.3e-131 474.6 748 47.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 3.0e-131 473.4 761 47.2
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.0e-131 473.4 777 41.8
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.4e-130 468.8 748 47.1
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 5.3e-128 462.6 686 47.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.7e-126 457.6 754 43.9
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 4.9e-126 456.1 765 45.4
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 7.1e-125 452.2 753 45.7
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-124 451.4 739 43.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.7e-124 450.3 768 45.3
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.8e-123 447.6 653 47.2
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.0e-123 446.8 629 50.2
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.3e-122 443.0 751 44.9
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 7.4e-122 442.2 751 44.7
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.2e-121 440.7 638 48.6
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-121 439.9 751 44.7
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.1e-120 438.3 782 44.2
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.8e-120 437.6 747 43.2
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 5.3e-120 436.0 731 42.0
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-119 433.0 748 41.4
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.3e-118 431.4 735 43.8
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.2e-118 430.6 741 44.5
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.1e-117 428.3 747 44.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.1e-117 428.3 746 41.4
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 7.2e-117 425.6 726 44.1
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.2e-116 424.9 766 41.4
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.2e-116 424.9 739 42.6
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 3.6e-116 423.3 754 44.2
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 7.9e-116 422.2 720 43.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 3.9e-115 419.9 738 42.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.5e-114 417.9 774 42.4
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.9e-114 417.5 782 41.4
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 9.7e-114 415.2 744 42.7
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.8e-112 411.0 732 43.2
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.4e-112 410.6 776 42.7
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.5e-111 407.9 729 41.3
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.5e-111 407.9 710 42.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.5e-111 407.9 766 41.8
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.9e-110 403.7 740 40.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.8e-107 394.4 728 42.2
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 3.3e-106 390.2 609 44.8
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.2e-105 387.5 754 42.0
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.2e-105 387.5 550 48.5
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.8e-102 376.7 593 46.5
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 6.5e-102 375.9 747 38.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.1e-100 370.9 727 40.9
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 6.3e-97 359.4 718 38.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.8e-96 357.8 622 45.7
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.0e-94 352.1 687 39.2
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 6.5e-94 349.4 727 37.7
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.8e-89 333.2 710 37.2
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.4e-72 278.5 159 89.9
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 5.6e-69 266.5 323 51.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 5.6e-69 266.5 323 51.1
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 2.3e-67 261.2 442 43.4
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-66 258.8 442 43.2
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 3.7e-65 253.8 389 47.3
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 8.3e-65 252.7 414 46.4
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 3.3e-61 240.7 348 49.7
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.4e-59 235.3 741 33.9
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 6.4e-57 226.5 875 30.9
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.0e-54 217.6 208 61.5
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.2e-48 197.6 762 27.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 4.3e-45 187.2 337 41.5
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 7.6e-42 176.4 350 39.1
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.5e-37 161.4 635 28.7
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 2.5e-37 161.4 374 40.1
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.5e-37 161.4 698 31.1
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 9.6e-37 159.5 147 59.2
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-35 155.6 143 65.0
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-27 129.4 107 69.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-27 128.6 102 66.7
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 5.3e-27 127.1 102 65.7
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.0e-26 125.2 163 46.6
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.9e-21 108.6 208 38.5
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.6e-20 105.5 147 42.2
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.8e-20 104.8 396 32.6
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 3.4e-18 97.8 169 39.6
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 3.8e-17 94.4 97 54.6
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.8e-17 94.4 77 66.2
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 6.7e-14 83.6 119 41.2
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.5e-13 81.6 92 54.3
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 2.8e-12 78.2 119 39.5
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.5e-10 72.4 61 62.3
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 1.0e-09 69.7 37 89.2
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 2.5e-08 65.1 39 84.6
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 5.5e-08 63.9 134 37.3


User provided reference genes

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