Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 0.0e+00 1201.4 681 100.0
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 6.7e-293 1010.4 678 85.5
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 5.8e-289 997.3 675 85.0
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.0e-277 958.4 675 81.0
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 5.9e-257 891.0 683 76.4
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.5e-239 833.2 690 72.6
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 2.3e-232 809.3 688 71.8
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.1e-214 749.6 678 69.5
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 7.3e-199 698.0 718 62.3
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.4e-197 693.7 685 64.8
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 3.4e-188 662.5 666 62.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 8.4e-187 657.9 678 61.7
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 6.2e-182 641.7 638 60.5
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 5.3e-181 638.6 666 61.1
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.6e-180 636.3 666 61.1
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 6.5e-179 631.7 677 60.1
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 6.7e-168 595.1 680 60.9
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.3e-147 527.7 714 49.0
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 1.7e-147 527.3 745 49.3
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 3.8e-147 526.2 747 48.9
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 6.5e-147 525.4 755 48.2
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 2.5e-146 523.5 745 49.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.2e-145 521.2 747 51.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.6e-145 520.8 753 47.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 8.0e-145 518.5 752 49.3
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.0e-144 518.1 762 48.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.8e-144 517.3 740 50.1
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.0e-144 516.5 752 48.7
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.0e-144 516.2 764 48.7
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.5e-143 514.2 740 50.3
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.8e-142 510.0 719 49.4
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 6.3e-142 508.8 748 48.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 8.2e-142 508.4 734 47.8
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 4.1e-141 506.1 747 47.5
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 5.3e-141 505.8 737 48.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.0e-140 503.8 751 48.6
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.7e-140 503.4 749 46.9
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.5e-140 503.1 746 48.8
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.7e-140 501.9 747 46.1
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 5.0e-139 499.2 760 46.8
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-137 494.6 741 49.1
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 8.8e-136 488.4 740 47.6
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 8.8e-136 488.4 714 48.5
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.6e-135 486.9 741 45.7
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.4e-135 486.5 736 47.6
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 5.7e-135 485.7 745 47.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 7.5e-135 485.3 736 45.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.7e-134 483.0 702 47.9
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-133 481.1 753 47.4
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.8e-133 480.7 743 47.1
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.1e-133 479.6 756 44.8
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.1e-133 479.6 702 47.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 4.1e-133 479.6 746 44.9
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 5.4e-133 479.2 745 44.3
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.1e-133 478.4 753 47.4
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.2e-132 478.0 697 47.5
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-132 478.0 702 47.7
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.6e-132 477.6 753 44.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.6e-132 477.6 749 47.3
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.7e-132 476.9 746 44.4
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.7e-132 476.9 737 48.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 3.5e-132 476.5 675 50.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.5e-132 476.1 751 46.3
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.0e-131 474.9 744 44.8
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.7e-131 474.2 747 46.1
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.9e-131 473.4 749 44.2
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.9e-131 473.4 744 46.0
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 6.5e-131 472.2 755 43.3
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 7.2e-130 468.8 739 46.8
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.1e-129 467.2 742 45.7
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 8.0e-129 465.3 633 50.7
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.4e-128 464.5 755 44.2
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 2.3e-128 463.8 703 49.2
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 4.0e-128 463.0 736 45.0
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 5.7e-127 459.1 753 43.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 7.5e-127 458.8 816 42.0
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.7e-126 457.6 787 42.3
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.3e-126 455.3 760 42.0
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 4.1e-125 453.0 744 46.8
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 4.1e-125 453.0 683 45.8
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.2e-125 451.8 740 47.3
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.2e-124 451.4 740 47.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.0e-124 450.7 740 47.2
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.3e-123 448.0 702 46.9
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 2.9e-123 446.8 772 42.6
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 5.6e-122 442.6 731 44.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.0e-120 438.3 710 43.5
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.0e-120 436.8 604 49.2
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.6e-119 433.7 753 45.2
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.9e-118 430.3 635 48.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 3.7e-118 429.9 719 43.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.8e-117 427.6 625 49.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 4.6e-116 422.9 757 44.1
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.6e-116 422.9 746 44.8
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.0e-115 419.5 688 42.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.5e-114 417.2 718 44.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.4e-112 411.4 745 45.5
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.4e-112 411.4 773 42.6
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.8e-112 411.0 740 44.7
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.5e-111 407.9 744 44.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 5.8e-111 406.0 752 43.1
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 3.7e-110 403.3 739 42.6
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 4.9e-110 402.9 735 39.6
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 4.9e-110 402.9 786 41.5
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.0e-108 397.5 731 39.0
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.0e-107 395.2 730 42.5
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.3e-107 394.0 652 42.5
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 7.3e-106 389.0 744 40.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 2.3e-104 384.0 681 41.4
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.0e-103 380.9 719 40.6
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.6e-103 380.6 703 39.5
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 6.4e-102 375.9 730 40.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-101 374.4 769 40.1
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.4e-101 374.0 660 40.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.4e-101 374.0 743 39.8
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.2e-101 373.6 741 41.8
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 5.4e-101 372.9 610 42.8
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.2e-100 371.7 791 39.2
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.6e-100 371.3 720 41.0
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.1e-100 370.9 548 47.6
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.0e-99 367.1 763 36.8
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 3.0e-99 367.1 666 42.8
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.5e-98 364.8 747 39.9
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.5e-98 364.0 765 38.8
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 4.7e-97 359.8 746 40.5
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.4e-96 358.2 717 39.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 3.1e-96 357.1 736 40.5
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 9.9e-95 352.1 739 41.8
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.2e-94 350.9 579 46.3
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 5.1e-91 339.7 659 39.5
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.2e-89 335.1 734 36.1
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.9e-85 321.2 590 44.1
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.9e-85 321.2 714 36.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.6e-81 308.1 724 35.9
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.8e-80 304.7 708 34.7
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-68 265.0 302 53.3
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-68 265.0 302 53.3
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 3.1e-64 250.8 702 34.3
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 5.3e-64 250.0 387 45.5
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 7.4e-58 229.6 162 76.5
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.1e-56 224.2 420 41.4
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.5e-55 221.9 420 41.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 3.9e-51 207.2 345 47.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 5.1e-51 206.8 420 41.9
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 8.7e-51 206.1 850 29.8
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 4.8e-49 200.3 693 29.4
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.7e-44 184.5 248 49.2
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.4e-43 182.2 336 40.8
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.3e-33 149.1 180 51.1
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.7e-33 148.7 354 33.1
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.3e-33 146.7 644 28.4
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-31 142.5 379 35.9
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.6e-31 141.4 703 30.3
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 2.2e-30 138.3 146 63.7
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 8.8e-27 126.3 103 70.9
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.2e-25 121.7 414 30.9
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 6.1e-20 103.6 169 40.2
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 8.0e-20 103.2 150 40.7
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.0e-18 98.6 126 46.0
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 6.3e-17 93.6 77 63.6
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.1e-16 92.8 262 34.7
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.1e-16 91.3 87 56.3
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 4.1e-16 90.9 82 59.8
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-14 85.9 109 41.3
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 6.5e-14 83.6 70 64.3
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.2e-13 80.9 109 40.4
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 8.3e-09 66.6 34 94.1
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 2.0e-07 62.0 39 82.1
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 1.3e-06 59.3 99 42.4
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 5.0e-06 57.4 130 34.6


User provided reference genes

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