Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 8.1e-123 443.7 221 100.0
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 1.1e-111 406.8 222 91.9
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 2.5e-108 395.6 222 91.0
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 4.0e-106 388.3 222 88.3
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 6.9e-106 387.5 222 89.6
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 5.8e-105 384.4 223 88.3
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 2.8e-99 365.5 222 84.2
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 3.1e-98 362.1 221 84.2
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 3.4e-97 358.6 222 84.2
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 4.5e-97 358.2 222 83.8
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 3.8e-96 355.1 219 82.6
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 2.5e-95 352.4 216 80.6
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 7.9e-94 347.4 222 81.1
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 1.7e-88 329.7 221 76.5
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 3.8e-88 328.6 208 78.4
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 3.8e-88 328.6 219 75.3
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 5.0e-88 328.2 227 75.3
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 1.1e-87 327.0 203 80.3
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 1.4e-87 326.6 197 81.7
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 2.7e-86 322.4 221 74.7
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 4.6e-86 321.6 219 75.3
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 7.9e-86 320.9 224 72.8
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 1.0e-85 320.5 200 79.0
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 1.8e-85 319.7 187 82.4
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 5.1e-85 318.2 193 81.3
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 8.7e-85 317.4 215 75.8
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 1.5e-84 316.6 216 73.6
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 4.3e-84 315.1 226 73.0
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 5.7e-84 314.7 181 83.4
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 7.4e-84 314.3 221 71.9
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 9.7e-84 313.9 193 80.3
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 1.3e-83 313.5 220 74.1
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 1.3e-83 313.5 208 75.5
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 1.6e-83 313.2 202 78.2
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 1.6e-83 313.2 200 77.0
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 2.2e-83 312.8 217 73.3
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 2.2e-83 312.8 182 83.0
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 3.7e-83 312.0 211 74.9
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 4.8e-83 311.6 219 72.6
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 6.3e-83 311.2 201 76.1
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 1.1e-82 310.5 188 80.3
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 1.8e-82 309.7 216 73.1
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.8e-82 309.7 197 79.2
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 3.1e-82 308.9 200 75.0
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 5.3e-82 308.1 194 78.9
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 5.3e-82 308.1 225 72.0
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 5.3e-82 308.1 184 81.5
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 6.9e-82 307.8 204 75.5
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 9.0e-82 307.4 221 72.9
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 1.5e-81 306.6 254 66.5
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 2.0e-81 306.2 201 76.1
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 2.6e-81 305.8 195 76.9
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 3.4e-81 305.4 197 77.2
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 4.5e-81 305.1 179 82.7
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 7.7e-81 304.3 227 69.6
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 2.9e-80 302.4 233 67.0
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 3.8e-80 302.0 198 76.8
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 8.5e-80 300.8 179 83.8
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 1.1e-79 300.4 205 71.2
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 1.1e-79 300.4 179 79.9
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 3.2e-79 298.9 198 74.2
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 4.2e-79 298.5 181 79.0
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 7.2e-79 297.7 226 66.4
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 1.2e-78 297.0 216 67.1
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 1.2e-78 297.0 191 77.0
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 1.2e-78 297.0 203 72.9
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 2.1e-78 296.2 234 67.5
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 2.7e-78 295.8 208 70.2
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 2.7e-78 295.8 179 81.6
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 3.6e-78 295.4 180 78.9
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 7.9e-78 294.3 223 70.0
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 7.9e-78 294.3 207 72.0
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 1.0e-77 293.9 193 76.2
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 1.0e-77 293.9 193 76.2
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 3.9e-77 292.0 200 73.5
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 3.3e-76 288.9 234 65.8
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 3.3e-76 288.9 202 72.3
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 4.3e-76 288.5 195 75.9
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 5.7e-76 288.1 178 80.3
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 3.7e-75 285.4 291 55.3
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 8.2e-75 284.3 182 77.5
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 1.1e-74 283.9 194 74.7
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 1.4e-74 283.5 176 79.5
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 3.1e-74 282.3 160 84.4
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 4.1e-74 282.0 163 82.8
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 6.9e-74 281.2 176 77.3
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 2.6e-73 279.3 190 70.5
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 4.5e-73 278.5 156 84.0
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 7.7e-73 277.7 156 85.3
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 1.3e-72 276.9 187 77.0
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 7.9e-70 267.7 166 76.5
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 3.5e-65 252.3 169 74.6
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 1.3e-64 250.4 237 56.5
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 1.9e-63 246.5 225 57.3
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 8.0e-62 241.1 147 77.6
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 4.1e-58 228.8 118 91.5
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 2.7e-57 226.1 154 74.0
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 2.9e-56 222.6 164 67.1
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.2e-54 217.2 122 82.0
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 4.7e-54 215.3 173 60.1
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.2e-49 200.7 122 74.6
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 1.1e-47 194.1 171 55.6
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 2.5e-47 193.0 180 55.6
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 7.0e-42 174.9 115 77.4
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 7.0e-42 174.9 115 77.4
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 1.2e-41 174.1 118 69.5
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 2.7e-41 172.9 99 80.8
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 6.6e-40 168.3 183 50.3
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 7.5e-28 128.3 113 61.9
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.0e-24 117.9 65 81.5
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 1.1e-23 114.4 72 79.2
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 5.4e-18 95.5 146 34.2
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 7.1e-18 95.1 165 36.4
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 1.5e-15 87.4 62 69.4
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 7.3e-15 85.1 79 58.2
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 9.5e-15 84.7 48 81.2
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 6.2e-14 82.0 129 33.3
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.3e-11 74.3 56 69.6
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 1.5e-07 60.8 215 22.3
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 1.9e-07 60.5 123 28.5


User provided reference genes

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