Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 1.8e-93 345.9 172 100.0
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 9.2e-82 307.0 172 89.5
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 2.0e-81 305.8 172 90.1
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 3.9e-80 301.6 172 89.0
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 1.3e-75 286.6 173 85.0
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 5.1e-72 274.6 173 82.1
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 1.5e-71 273.1 172 80.8
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 1.5e-71 273.1 172 80.8
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 1.9e-71 272.7 174 81.6
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 1.2e-70 270.0 172 79.7
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 7.3e-63 244.2 172 73.8
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 6.4e-59 231.1 142 83.8
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 5.1e-56 221.5 172 65.1
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 1.3e-54 216.9 174 67.2
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 4.8e-54 214.9 154 72.1
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 1.2e-52 210.3 124 82.3
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 2.0e-52 209.5 131 77.9
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 2.0e-52 209.5 131 77.9
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 2.6e-52 209.1 120 81.7
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 2.6e-52 209.1 156 66.0
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 4.5e-52 208.4 118 80.5
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 5.8e-52 208.0 152 69.1
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 7.6e-52 207.6 151 69.5
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 7.6e-52 207.6 162 65.4
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 1.3e-51 206.8 184 62.5
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 2.2e-51 206.1 113 82.3
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 2.9e-51 205.7 142 73.2
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 1.1e-50 203.8 172 61.0
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 1.4e-50 203.4 141 70.2
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.9e-50 203.0 142 72.5
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.9e-50 203.0 142 72.5
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 2.4e-50 202.6 131 75.6
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 2.4e-50 202.6 134 73.9
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 3.2e-50 202.2 142 72.5
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 5.4e-50 201.4 117 82.1
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 7.1e-50 201.1 175 60.6
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 9.3e-50 200.7 158 67.1
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 1.2e-49 200.3 119 78.2
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 1.2e-49 200.3 168 63.1
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.2e-49 200.3 142 71.8
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.6e-49 199.9 142 71.8
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 1.6e-49 199.9 119 78.2
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.1e-49 199.5 142 71.1
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 6.0e-49 198.0 172 64.0
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 7.9e-49 197.6 139 75.5
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 1.0e-48 197.2 177 62.1
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 1.8e-48 196.4 156 66.7
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 1.8e-48 196.4 162 66.0
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 3.0e-48 195.7 128 75.0
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 3.0e-48 195.7 128 75.0
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 3.0e-48 195.7 116 77.6
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 3.0e-48 195.7 157 64.3
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 1.1e-47 193.7 136 71.3
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 1.9e-47 193.0 162 63.0
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 1.9e-47 193.0 125 75.2
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 2.5e-47 192.6 128 71.9
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 3.3e-47 192.2 174 60.3
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 3.3e-47 192.2 174 60.3
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 4.3e-47 191.8 145 66.9
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 5.6e-47 191.4 129 72.1
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 7.4e-47 191.0 147 70.7
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 9.6e-47 190.7 173 60.7
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 9.6e-47 190.7 172 59.9
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 1.3e-46 190.3 172 61.6
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 1.3e-46 190.3 126 69.8
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 1.3e-46 190.3 155 61.3
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.6e-46 189.9 137 68.6
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 3.7e-46 188.7 111 78.4
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 3.7e-46 188.7 127 70.9
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 1.1e-45 187.2 98 85.7
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 1.1e-45 187.2 162 63.6
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 1.1e-45 187.2 154 64.9
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 1.4e-45 186.8 170 58.8
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 1.4e-45 186.8 114 77.2
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 1.4e-45 186.8 114 77.2
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 1.4e-45 186.8 152 62.5
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 1.8e-45 186.4 137 66.4
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 1.8e-45 186.4 96 86.5
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 3.1e-45 185.7 171 59.1
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 4.0e-45 185.3 147 64.6
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 5.3e-45 184.9 163 62.6
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 6.9e-45 184.5 97 83.5
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 6.9e-45 184.5 134 66.4
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 9.0e-45 184.1 169 59.8
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 9.0e-45 184.1 134 66.4
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 1.2e-44 183.7 109 75.2
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 1.2e-44 183.7 134 66.4
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 1.5e-44 183.3 172 59.9
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 2.0e-44 183.0 122 69.7
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 2.0e-44 183.0 192 51.0
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 3.4e-44 182.2 118 73.7
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 4.5e-44 181.8 165 61.8
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 4.5e-44 181.8 192 51.0
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 7.6e-44 181.0 97 81.4
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 1.7e-43 179.9 98 82.7
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 2.2e-43 179.5 96 80.2
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 2.9e-43 179.1 155 59.4
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 6.4e-43 177.9 126 68.3
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 1.2e-41 173.7 99 78.8
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 2.1e-41 172.9 183 50.3
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 3.0e-40 169.1 141 59.6
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 6.7e-40 167.9 99 76.8
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 3.3e-39 165.6 137 63.5
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 9.6e-39 164.1 109 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 1.8e-37 159.8 165 55.2
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 6.5e-35 151.4 171 50.3
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.9e-34 149.8 88 75.0
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 2.7e-33 146.0 128 60.9
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 4.6e-33 145.2 169 51.5
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 3.0e-32 142.5 105 70.5
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 5.1e-32 141.7 99 65.7
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 5.9e-28 128.3 130 53.8
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 1.0e-24 117.5 90 57.8
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 3.0e-24 115.9 65 80.0
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 4.3e-23 112.1 132 49.2
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 2.4e-21 106.3 127 49.6
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 1.7e-11 73.6 36 94.4
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 1.4e-10 70.5 35 88.6


User provided reference genes

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