Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 2245.3 1186 100.0
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1970.7 1189 88.4
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1944.5 1188 86.4
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1897.9 1190 84.6
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1886.7 1188 83.8
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1823.1 1190 81.2
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1812.3 1191 81.0
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1810.8 1191 80.9
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1802.3 1192 80.5
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1801.9 1192 80.5
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 1801.9 1192 80.5
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 0.0e+00 1790.4 1191 80.6
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 1697.6 1193 75.9
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1465.7 1179 69.6
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1110.9 1208 54.1
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1104.4 1076 57.3
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 1228 52.9
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1090.9 1123 55.5
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1087.0 1237 51.7
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1080.9 1237 51.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 2.8e-310 1068.9 1174 53.3
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 1.4e-309 1066.6 1169 53.6
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 5.2e-309 1064.7 1121 55.2
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 1.1e-306 1057.0 1180 53.1
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.9e-304 1048.5 1236 51.4
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 3.9e-304 1048.5 1104 53.0
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 6.6e-304 1047.7 1192 52.0
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.8e-301 1039.6 1097 53.6
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 5.2e-301 1038.1 1121 52.9
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 8.9e-301 1037.3 1104 53.7
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 9.8e-300 1033.9 1111 54.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 8.3e-299 1030.8 1228 49.1
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.1e-298 1030.4 1108 52.4
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-298 1030.0 1161 51.3
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 7.0e-298 1027.7 1128 53.4
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 1.2e-297 1026.9 1139 51.7
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 3.5e-297 1025.4 1176 50.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.5e-295 1020.0 1145 52.2
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 2.5e-295 1019.2 1120 53.6
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.2e-292 1010.4 1125 52.3
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 8.3e-291 1004.2 1236 49.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 1.4e-290 1003.4 1292 48.3
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 2.4e-290 1002.7 1248 49.1
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.2e-289 1000.3 1181 51.0
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.6e-289 1000.0 1266 48.4
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.3e-288 996.9 1264 48.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 8.6e-288 994.2 1172 50.2
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 4.3e-287 991.9 1082 53.2
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.3e-287 991.9 993 56.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 7.3e-287 991.1 955 57.1
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.2e-286 990.3 1224 48.4
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 6.8e-285 984.6 1101 50.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 4.4e-284 981.9 1106 51.9
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.4e-284 981.9 1267 48.2
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.8e-284 981.5 1267 48.3
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 4.9e-283 978.4 1271 47.3
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.1e-282 977.2 1124 49.9
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 9.2e-282 974.2 1237 47.2
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 3.5e-281 972.2 1114 50.9
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.0e-280 970.7 1204 48.1
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.7e-280 969.9 1104 51.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.9e-279 966.5 1190 48.6
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 5.6e-279 964.9 1263 47.8
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 8.9e-277 957.6 1131 50.8
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.2e-276 957.2 1183 49.8
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 4.4e-276 955.3 1112 50.2
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.6e-273 946.8 1269 46.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.7e-273 946.0 1097 51.4
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 6.2e-270 934.9 1208 47.5
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.4e-269 933.7 1112 49.6
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 7.6e-268 927.9 1171 49.1
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.1e-266 924.1 1161 48.1
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.1e-265 919.8 927 55.9
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.3e-264 917.1 1163 48.1
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.0e-264 916.0 1137 48.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 7.3e-263 911.4 1191 46.6
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.8e-261 906.7 1246 46.8
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 4.0e-261 905.6 1238 46.8
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 4.5e-260 902.1 1168 47.2
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.2e-259 899.8 1228 45.9
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 3.2e-258 896.0 915 55.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.6e-257 893.6 1309 44.2
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.0e-256 891.0 1111 48.5
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.6e-254 883.6 1167 46.0
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.1e-254 883.2 1295 44.6
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 5.5e-242 842.0 1154 47.2
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.5e-236 823.9 1315 41.4
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.3e-235 820.8 1299 42.7
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 6.5e-235 818.5 982 49.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.4e-234 817.4 1105 45.9
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.7e-227 793.9 1156 43.9
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 8.5e-227 791.6 1110 44.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 2.2e-222 776.9 1194 42.0
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 8.0e-217 758.4 1230 40.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.8e-216 757.3 1224 41.9
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.1e-215 754.6 972 48.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 4.8e-214 749.2 1141 42.5
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.6e-209 734.2 1164 40.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.5e-194 683.7 1157 40.8
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 9.5e-194 681.8 917 47.0
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.0e-192 676.4 897 45.3
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.6e-191 673.7 552 63.2
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 3.5e-180 636.7 515 65.0
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.3e-174 618.2 1206 38.1
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.2e-165 587.0 525 58.5
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.6e-164 583.2 1078 36.1
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.4e-160 570.9 1098 37.1
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 4.5e-143 513.5 1196 32.6
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.1e-132 478.0 666 42.8
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.5e-101 373.6 960 30.4
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.4e-83 315.8 538 41.4
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.3e-77 294.3 246 63.8
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 4.4e-66 257.7 301 51.8
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 9.5e-53 213.4 164 64.0
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 8.1e-52 210.3 183 58.5
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-48 198.4 266 41.4
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 5.6e-45 187.6 139 69.8
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 5.6e-37 161.0 626 27.2
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.2e-32 145.2 105 63.8
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.9e-30 138.3 110 60.9
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.3e-29 134.8 119 58.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.8e-27 129.4 106 61.3
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 1.2e-26 126.7 84 67.9
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 4.2e-24 118.2 227 35.7
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.5e-21 109.0 115 53.0
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 2.5e-21 109.0 131 50.4
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.6e-20 106.3 120 51.7
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 9.0e-19 100.5 121 43.8
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 2.0e-18 99.4 131 45.0
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-16 93.6 115 47.8
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.6e-15 88.2 407 26.0
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 3.3e-13 82.0 63 65.1
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.5e-10 73.2 94 43.6
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.0e-09 70.5 64 53.1
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.2e-07 63.5 97 37.1
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 1.4e-06 60.1 63 44.4
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 5.1e-06 58.2 111 38.7


User provided reference genes

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