Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 1.5e-147 526.2 265 100.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.2e-120 436.8 260 85.8
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 4.5e-120 434.9 260 84.6
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 9.7e-115 417.2 264 77.3
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 2.8e-114 415.6 264 76.9
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 8.2e-114 414.1 263 76.4
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.9e-87 325.9 207 76.8
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.9e-87 325.9 268 63.1
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 4.7e-85 318.5 219 75.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 6.1e-85 318.2 203 77.8
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 4.0e-84 315.5 277 58.8
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 3.4e-83 312.4 280 58.9
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 1.7e-82 310.1 281 58.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 8.0e-77 291.2 265 59.6
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.2e-69 265.0 284 53.5
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.6e-67 259.6 285 49.5
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 6.0e-64 248.4 288 45.5
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.7e-63 246.9 289 47.1
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 3.0e-63 246.1 267 48.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.2e-61 240.7 289 46.7
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 1.6e-61 240.4 298 43.6
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.6e-61 239.2 289 45.7
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.2e-59 234.2 286 47.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.5e-59 233.8 290 43.1
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.4e-59 232.3 293 44.7
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 5.8e-59 231.9 251 49.0
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.3e-58 230.7 295 42.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.3e-58 230.7 287 45.6
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 2.2e-58 229.9 292 43.8
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 4.9e-58 228.8 287 41.8
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.9e-57 226.9 291 46.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.9e-57 226.9 281 46.3
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.9e-57 226.9 279 44.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.4e-57 226.5 284 46.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 3.2e-57 226.1 297 43.1
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 4.2e-57 225.7 282 46.1
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 7.1e-57 224.9 251 47.8
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 7.1e-57 224.9 251 47.8
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 7.1e-57 224.9 298 43.6
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.2e-57 224.6 279 44.4
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 1.2e-56 224.2 281 47.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 1.6e-56 223.8 266 47.0
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 2.1e-56 223.4 279 43.7
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.1e-56 223.4 281 43.4
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-56 223.0 251 47.4
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.5e-56 222.6 251 47.4
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 4.6e-56 222.2 290 43.4
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.8e-56 221.5 199 57.8
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.3e-55 220.7 287 42.5
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.7e-55 220.3 292 43.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 2.3e-55 219.9 284 43.3
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.6e-55 218.4 251 46.6
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 8.7e-55 218.0 286 44.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 4.3e-54 215.7 279 45.2
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.8e-53 213.0 281 41.6
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.8e-53 213.0 287 42.9
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.8e-53 213.0 280 41.4
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 6.2e-53 211.8 292 40.8
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.8e-52 210.3 288 44.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.4e-52 209.9 291 40.5
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 6.9e-52 208.4 283 42.8
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 6.9e-52 208.4 290 41.7
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 9.0e-52 208.0 285 42.5
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.5e-51 207.2 283 43.1
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 3.4e-51 206.1 288 41.7
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.4e-51 205.7 290 39.3
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.8e-51 205.3 286 41.3
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 7.6e-51 204.9 282 42.9
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.9e-51 204.5 283 42.4
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 1.3e-50 204.1 290 42.1
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.7e-50 203.8 282 42.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.7e-50 203.8 251 44.2
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.9e-50 203.0 301 39.2
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 3.8e-50 202.6 290 41.0
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 3.8e-50 202.6 286 40.9
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 4.9e-50 202.2 286 41.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.1e-49 201.1 270 45.2
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 4.2e-49 199.1 288 37.8
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 4.2e-49 199.1 231 47.2
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 5.4e-49 198.7 291 40.2
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 7.1e-49 198.4 291 40.9
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.2e-48 197.6 290 41.0
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 7.8e-48 194.9 288 39.9
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 3.3e-46 189.5 264 42.0
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.3e-45 187.6 288 38.9
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.6e-45 187.2 203 50.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 8.1e-45 184.9 267 40.4
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 1.6e-40 170.6 282 34.4
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 2.1e-40 170.2 206 44.2
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 3.5e-40 169.5 127 67.7
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 6.0e-40 168.7 108 78.7
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 7.9e-40 168.3 158 53.8
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.8e-36 157.1 198 43.9
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 4.0e-36 156.0 142 54.9
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.0e-36 154.8 232 38.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.6e-35 153.3 196 44.9
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.6e-35 153.3 330 33.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 5.8e-35 152.1 288 34.7
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.3e-34 151.0 230 39.6
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.5e-33 146.7 266 33.8
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 4.2e-33 146.0 196 40.8
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.6e-32 144.1 301 32.6
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.5e-30 137.5 218 38.5
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 3.1e-28 129.8 212 37.3
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 6.9e-28 128.6 216 36.1
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 5.0e-26 122.5 266 30.8
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.2e-25 119.4 136 46.3
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.0e-23 114.8 203 36.9
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 8.7e-23 111.7 107 53.3
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 6.3e-21 105.5 89 59.6
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.4e-20 104.4 252 28.2
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.1e-20 102.8 120 47.5
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 2.1e-16 90.5 73 63.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.1e-16 89.0 108 41.7
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 7.9e-16 88.6 196 31.6
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.3e-15 87.0 81 58.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.3e-15 87.0 81 58.0
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 5.1e-15 85.9 112 38.4
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.7e-13 80.9 298 26.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-10 70.9 58 55.2
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.2e-10 70.5 159 30.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 5.0e-10 69.3 58 53.4
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 6.5e-10 68.9 57 54.4
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 1.1e-09 68.2 304 27.6
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-09 67.8 57 52.6


User provided reference genes

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