Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.9e-93 344.7 170 100.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.8e-90 335.9 170 95.9
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 9.1e-90 333.6 170 94.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 3.8e-88 328.2 170 92.4
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.4e-87 326.2 170 92.4
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.4e-87 326.2 171 93.0
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 7.2e-87 323.9 170 91.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 7.2e-87 323.9 170 90.6
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-86 322.8 172 90.7
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-86 322.8 170 90.6
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.7e-86 322.0 170 90.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.7e-86 322.0 170 90.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.7e-86 322.0 171 91.2
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.7e-86 322.0 171 91.2
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 6.1e-86 320.9 171 90.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 6.1e-86 320.9 171 90.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 7.9e-86 320.5 170 90.0
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.9e-86 320.5 170 91.2
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-85 319.7 171 90.6
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.0e-85 318.5 170 90.0
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.5e-84 316.2 170 90.0
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.6e-84 315.5 170 90.0
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 5.7e-84 314.3 170 90.0
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.6e-81 305.4 170 87.1
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.6e-81 305.4 170 87.1
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 7.7e-81 303.9 167 88.6
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.3e-80 303.1 170 85.3
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.9e-79 299.3 170 87.1
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.2e-79 297.4 170 85.3
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.6e-78 296.2 170 85.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.7e-78 294.7 168 83.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.0e-77 293.5 170 82.9
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.4e-77 293.1 170 83.5
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 4.0e-77 291.6 170 82.9
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 5.2e-77 291.2 171 83.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 8.8e-77 290.4 171 82.5
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 8.8e-77 290.4 170 80.6
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.5e-76 289.7 171 81.9
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.6e-76 288.9 172 83.7
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.6e-76 288.9 170 82.4
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 3.3e-76 288.5 170 80.6
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 7.5e-76 287.3 168 81.5
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 7.5e-76 287.3 169 82.8
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 9.7e-76 287.0 169 82.2
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.7e-76 287.0 169 82.2
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.7e-76 287.0 169 82.2
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.7e-76 287.0 169 82.2
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.2e-75 285.8 164 84.1
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-75 285.8 169 81.7
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-75 285.8 169 81.7
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-75 285.8 169 82.2
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.2e-75 285.8 170 81.8
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.3e-75 284.3 169 81.7
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 81.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.3e-75 284.3 170 81.2
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.8e-74 282.7 157 86.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 2.4e-74 282.3 163 82.2
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 9.1e-74 280.4 169 78.7
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 9.1e-74 280.4 165 81.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.2e-73 280.0 170 80.0
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-73 280.0 168 80.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.7e-73 278.9 170 78.8
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.5e-73 278.1 170 79.4
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 5.9e-73 277.7 168 78.6
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.3e-72 276.6 163 81.0
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 80.6
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.9e-72 275.4 177 76.8
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.9e-72 275.4 177 76.8
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.5e-72 273.9 164 78.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 8.5e-72 273.9 168 77.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 8.5e-72 273.9 170 77.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.5e-71 273.1 178 75.3
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.9e-71 272.7 170 80.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.9e-71 272.7 170 77.6
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 2.5e-71 272.3 164 79.9
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.2e-71 271.9 178 74.7
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 4.2e-71 271.6 170 77.6
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 5.5e-71 271.2 168 78.6
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 5.5e-71 271.2 170 75.9
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.5e-71 271.2 173 75.7
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.5e-71 271.2 170 77.1
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 7.2e-71 270.8 173 78.6
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-70 270.0 148 85.1
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.2e-70 270.0 173 78.6
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.6e-70 269.6 168 78.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 2.1e-70 269.2 178 73.0
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.7e-70 268.9 168 78.0
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.0e-69 266.9 178 73.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.4e-69 266.5 171 76.0
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.8e-69 266.2 164 76.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 175 73.7
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 164 77.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.3e-69 265.8 178 72.5
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.3e-69 265.8 166 76.5
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 3.0e-69 265.4 176 74.4
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.0e-69 265.4 170 75.3
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.0e-69 265.4 171 77.2
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 4.0e-69 265.0 174 74.1
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.8e-69 264.2 164 75.0
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 6.8e-69 264.2 151 81.5
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 8.8e-69 263.8 172 75.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 8.8e-69 263.8 164 75.0
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.2e-68 263.5 174 75.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-68 263.1 156 78.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 3.4e-68 261.9 170 74.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 3.4e-68 261.9 174 75.3
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 3.4e-68 261.9 178 73.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 4.4e-68 261.5 163 76.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 9.8e-68 260.4 170 76.5
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.3e-67 260.0 164 76.2
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 74.7
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 74.7
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.2e-67 259.2 161 77.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.8e-67 258.1 166 74.7
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 8.3e-67 257.3 158 78.5
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 157 77.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.1e-66 256.9 162 74.1
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 3.1e-66 255.4 152 77.6
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 4.1e-66 255.0 170 70.6
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 9.1e-66 253.8 175 72.6
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.6e-65 253.1 157 75.8
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.6e-65 253.1 164 72.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.6e-65 253.1 180 71.1
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.6e-65 253.1 180 71.1
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.6e-65 253.1 153 79.7
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.6e-65 253.1 172 73.3
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 2.0e-65 252.7 158 76.6
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.5e-65 251.9 175 72.0
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 3.5e-65 251.9 157 76.4
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 4.5e-65 251.5 175 71.4
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 7.7e-65 250.8 162 74.7
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 2.2e-64 249.2 157 75.8
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.5e-63 246.5 163 71.2
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.9e-63 246.1 163 72.4
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-62 243.4 228 56.1
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.3e-59 233.4 146 74.0
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.7e-59 233.0 155 70.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.2e-59 232.6 176 66.5
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.1e-58 230.3 127 83.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-56 223.8 140 75.0
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.3e-56 222.6 164 66.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.8e-54 215.7 129 77.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.4e-52 208.8 152 62.5
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 2.2e-51 206.1 129 76.0
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.2e-49 200.3 170 65.3
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 6.6e-48 194.5 109 82.6
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 2.6e-44 182.6 134 65.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.4e-42 176.8 133 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.0e-41 172.9 134 61.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.0e-41 172.9 134 59.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.5e-41 172.2 158 56.3
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.1e-39 167.2 108 77.8
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.3e-39 165.6 142 57.0
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-38 163.3 88 93.2
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 5.4e-34 148.3 86 86.0
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.6e-33 146.7 112 67.9
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.9e-32 142.1 170 52.4
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.4e-29 133.7 120 50.8
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 8.9e-29 131.0 68 85.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 8.9e-29 131.0 105 68.6
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.9e-26 123.2 99 59.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 7.1e-26 121.3 98 62.2
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.0e-25 118.2 139 42.4
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.3e-24 116.3 174 39.1
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-22 109.8 124 41.9
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-22 109.8 124 41.9
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 3.6e-22 109.0 71 71.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 3.1e-21 105.9 55 80.0
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.5e-20 103.6 65 70.8
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 3.3e-15 85.9 96 42.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 3.3e-15 85.9 96 42.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.3e-14 84.0 64 60.9
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.1e-14 83.2 55 70.9
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 6.2e-14 81.6 95 38.9
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 2.2e-11 73.2 95 43.2
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.9e-11 72.8 42 69.0


User provided reference genes

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