Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 7.9e-184 647.5 402 100.0
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.1e-174 617.1 402 96.3
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 2.0e-174 616.3 400 96.2
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 4.1e-172 608.6 402 94.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-170 602.8 403 93.5
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 2.2e-170 602.8 403 93.5
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-170 602.4 403 93.5
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.9e-170 602.4 403 93.5
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.9e-170 602.4 403 93.5
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 8.5e-170 600.9 397 94.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 5.2e-167 591.7 401 87.8
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 2.8e-165 585.9 388 94.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.9e-161 573.2 402 90.3
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 7.3e-153 544.7 403 72.5
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.6e-150 536.2 403 74.7
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-134 484.2 415 65.8
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 2.2e-133 479.9 390 66.9
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 4.9e-133 478.8 404 77.0
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.4e-133 478.4 403 77.4
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 6.4e-133 478.4 403 76.9
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 8.3e-133 478.0 398 79.1
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 8.3e-133 478.0 403 77.4
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.4e-132 477.2 403 77.2
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 7.1e-132 474.9 392 69.9
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 7.1e-132 474.9 401 77.6
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 7.1e-132 474.9 401 77.6
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 9.2e-132 474.6 403 76.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.2e-131 474.2 390 79.2
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.2e-131 474.2 403 76.4
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.5e-131 472.6 393 77.9
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.5e-131 472.6 390 78.7
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 4.6e-131 472.2 402 70.6
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 7.8e-131 471.5 390 80.0
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.3e-130 470.7 390 74.4
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.7e-130 470.3 397 72.5
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 5.1e-130 468.8 401 75.6
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 6.6e-130 468.4 394 77.4
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 8.6e-130 468.0 400 71.5
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.5e-129 466.5 391 69.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.3e-129 465.7 393 77.4
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 5.6e-129 465.3 394 74.6
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 5.6e-129 465.3 390 77.9
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 7.3e-129 464.9 390 77.4
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.8e-128 463.0 390 77.7
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 2.8e-128 463.0 396 71.7
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 3.6e-128 462.6 394 77.9
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 6.2e-128 461.8 390 76.9
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 8.1e-128 461.5 406 73.6
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 8.1e-128 461.5 390 77.4
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 8.1e-128 461.5 393 77.4
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.4e-127 460.7 394 76.1
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.4e-127 460.7 391 71.9
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.4e-127 460.7 391 71.9
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.3e-127 459.9 394 76.9
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.3e-127 459.9 391 71.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.1e-127 459.5 394 77.9
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.1e-127 459.5 414 64.7
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 3.1e-127 459.5 390 77.9
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 3.1e-127 459.5 398 65.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 4.0e-127 459.1 409 66.7
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 6.8e-127 458.4 389 75.6
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 6.8e-127 458.4 395 77.2
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 6.8e-127 458.4 390 76.4
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 8.9e-127 458.0 390 76.9
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.5e-126 457.2 414 64.5
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.5e-126 457.2 401 76.1
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.6e-126 456.4 410 64.1
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 5.8e-126 455.3 390 76.7
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 9.9e-126 454.5 393 72.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.7e-125 453.8 389 78.7
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.7e-125 453.8 403 74.9
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.2e-125 453.4 390 78.7
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 2.9e-125 453.0 397 67.8
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 4.9e-125 452.2 390 75.4
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 6.4e-125 451.8 398 65.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 6.4e-125 451.8 394 76.9
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 6.4e-125 451.8 385 77.9
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.1e-124 451.1 390 76.7
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 1.4e-124 450.7 389 76.1
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.0e-122 444.5 398 76.1
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.7e-122 443.7 389 66.6
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 3.0e-122 443.0 390 75.9
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 3.9e-122 442.6 403 68.0
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 6.6e-122 441.8 389 66.1
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.6e-122 441.8 404 65.8
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-121 440.7 420 62.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.5e-121 440.7 404 65.6
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.3e-121 439.5 404 65.6
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 4.3e-121 439.1 393 66.9
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 5.6e-121 438.7 389 65.8
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 9.6e-121 438.0 405 71.6
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-120 436.4 402 64.4
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.8e-120 436.4 402 64.4
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 4.7e-120 435.6 389 73.5
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 6.2e-120 435.3 393 61.8
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.4e-119 434.1 390 65.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 3.1e-119 433.0 432 60.2
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 6.9e-119 431.8 402 64.2
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 2.6e-118 429.9 402 71.1
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.4e-116 424.1 397 59.9
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 2.4e-116 423.3 388 72.9
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.2e-115 421.0 391 64.5
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 2.7e-115 419.9 398 61.1
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 6.0e-115 418.7 396 71.0
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.5e-113 414.1 391 72.4
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.3e-113 412.9 513 57.5
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.8e-112 409.8 391 64.5
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 9.9e-110 401.4 402 60.2
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 9.9e-110 401.4 351 76.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.9e-110 401.4 422 59.0
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.7e-109 400.6 390 71.8
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.9e-109 399.8 390 71.5
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.4e-108 397.5 390 70.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 3.2e-108 396.4 530 55.5
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 3.2e-108 396.4 428 56.5
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 3.5e-107 392.9 403 69.0
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 7.4e-105 385.2 389 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.1e-103 381.3 402 63.2
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-103 381.3 390 61.5
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.6e-102 376.7 400 63.0
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 5.8e-102 375.6 389 64.3
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.8e-98 364.0 402 53.2
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 3.0e-98 363.2 377 57.3
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 1.6e-96 357.5 416 54.1
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 4.8e-96 355.9 444 45.7
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 8.2e-96 355.1 407 54.5
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 4.6e-91 339.3 314 78.0
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.8e-88 330.1 386 52.3
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.3e-88 328.9 295 73.6
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 4.1e-87 326.2 254 73.2
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 5.9e-86 322.4 254 72.8
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.0e-85 321.6 386 49.5
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.6e-83 314.3 249 73.1
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 3.9e-82 309.7 318 62.6
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.5e-81 307.0 387 47.3
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 3.3e-81 306.6 335 56.7
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.7e-75 287.0 368 48.4
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 4.7e-67 259.6 417 44.1
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 6.3e-64 249.2 398 39.4
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.0e-62 244.2 198 59.6
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.5e-60 237.3 293 66.9
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 1.7e-56 224.6 293 45.7
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 3.7e-56 223.4 297 45.5
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 3.7e-56 223.4 380 45.5
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 9.1e-55 218.8 190 59.5
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 6.1e-43 179.5 119 71.4
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.0e-41 174.5 101 79.2
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.1e-39 167.2 101 76.2
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.6e-37 159.5 132 59.8
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.8e-35 154.1 84 82.1
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 4.0e-34 150.2 101 69.3
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 4.0e-34 150.2 358 34.9
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.2e-32 144.4 90 81.1
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 3.2e-31 140.6 94 74.5
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 4.6e-30 136.7 106 68.9
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 4.6e-30 136.7 181 40.9
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 6.2e-27 126.3 79 78.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 2.3e-26 124.4 138 50.7
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.9e-24 117.5 293 35.5
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 2.4e-23 114.4 86 65.1
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 5.4e-23 113.2 120 65.0
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 2.7e-22 110.9 56 82.1
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 6.0e-22 109.8 76 68.4
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 4.3e-20 103.6 164 36.6
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.4e-17 93.6 50 76.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 7.5e-17 92.8 65 63.1
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.3e-13 81.3 59 61.0
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 2.5e-12 77.8 40 80.0
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 5.6e-12 76.6 47 68.1
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.2e-11 75.5 41 73.2
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.6e-11 75.1 39 79.5
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 4.7e-11 73.6 40 80.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 4.7e-11 73.6 40 80.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.7e-11 73.6 39 76.9
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 6.2e-11 73.2 41 70.7
C03p42670 Brassica napus HOM05D003606 ORTHO05D016710 9.9e-09 65.9 140 32.1
C03p67300 Brassica napus HOM05D003606 ORTHO05D016710 9.9e-09 65.9 140 32.1
BolSC21t60295H Brassica oleracea HOM05D003606 ORTHO05D016710 9.9e-09 65.9 140 32.1
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 2.2e-08 64.7 40 65.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 1.1e-07 62.4 35 71.4
BolC2t06237H Brassica oleracea HOM05D003606 ORTHO05D016710 1.9e-07 61.6 140 32.9
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-07 61.6 41 61.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 2.1e-06 58.2 69 42.0
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 2.7e-06 57.8 58 46.6
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 3.5e-06 57.4 46 52.2


User provided reference genes

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