Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 3.2e-25 117.5 53 100.0
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 2.6e-19 97.8 53 83.0
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 9.9e-19 95.9 53 83.0
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 9.3e-17 89.4 53 79.2
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.2e-16 89.0 53 73.6
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 1.6e-16 88.6 53 71.7
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 2.1e-16 88.2 53 71.7
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 2.1e-16 88.2 53 71.7
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 2.7e-16 87.8 53 73.6
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 2.7e-16 87.8 53 77.4
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 6.0e-16 86.7 53 69.8
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 7.9e-16 86.3 53 71.7
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 1.0e-15 85.9 53 71.7
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 1.0e-15 85.9 53 71.7
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.8e-15 85.1 52 69.2
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.3e-15 84.7 51 72.5
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 3.0e-15 84.3 53 69.8
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.9e-15 84.0 53 71.7
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 5.1e-15 83.6 53 71.7
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.5e-14 82.0 53 67.9
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.9e-14 81.6 52 71.2
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.9e-14 81.6 53 66.0
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 1.9e-14 81.6 53 67.9
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 3.3e-14 80.9 53 67.9
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 3.3e-14 80.9 51 66.7
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 7.4e-14 79.7 53 67.9
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 3.7e-13 77.4 53 73.6
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 3.7e-13 77.4 53 73.6
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 3.7e-13 77.4 53 69.8
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 3.7e-13 77.4 53 64.2
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 3.7e-13 77.4 53 69.8
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.7e-13 77.4 52 63.5
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 6.2e-13 76.6 51 68.6
A03p56200 Brassica napus HOM05D002831 ORTHO05D010484 8.1e-13 76.3 53 67.9
BraA03t14690Z Brassica rapa HOM05D002831 ORTHO05D010484 8.1e-13 76.3 53 67.9
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 8.1e-13 76.3 53 66.0
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.1e-12 75.9 53 64.2
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.1e-12 75.9 53 64.2
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.1e-12 75.9 53 64.2
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.4e-12 75.5 52 59.6
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 1.8e-12 75.1 52 65.4
A02p11710 Brassica napus HOM05D002831 ORTHO05D010484 3.1e-12 74.3 37 86.5
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 4.0e-12 73.9 53 64.2
BolC7t45935H Brassica oleracea HOM05D002831 ORTHO05D010484 5.3e-12 73.6 53 66.0
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 6.9e-12 73.2 53 62.3
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 6.9e-12 73.2 53 62.3
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.2e-11 72.4 44 72.7
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 1.5e-11 72.0 53 64.2
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 2.0e-11 71.6 51 66.7
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 2.6e-11 71.2 44 70.5
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 3.4e-11 70.9 44 70.5
CARHR233140 Cardamine hirsuta HOM05D002831 ORTHO05D010484 7.6e-11 69.7 36 83.3
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 9.9e-11 69.3 44 68.2
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.3e-10 68.9 44 68.2
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.3e-10 68.9 43 69.8
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 3.8e-10 67.4 43 67.4
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 3.8e-10 67.4 52 61.5
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 4.9e-10 67.0 43 72.1
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 1.4e-09 65.5 53 60.4
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 3.2e-09 64.3 50 58.0
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 5.5e-09 63.5 43 60.5
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 7.1e-09 63.2 53 56.6
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 9.3e-09 62.8 53 58.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.2e-08 62.4 52 53.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.2e-08 62.4 47 61.7
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.2e-08 62.4 43 62.8
Carub.0007s1526 Capsella rubella HOM05D002831 ORTHO05D010484 1.6e-08 62.0 45 64.4
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 1.6e-08 62.0 41 73.2
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.6e-08 62.0 44 68.2
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.1e-08 61.6 45 62.2
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.0e-07 59.3 46 56.5
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.3e-07 58.9 40 70.0
C02p19530 Brassica napus HOM05D002831 ORTHO05D010484 1.8e-07 58.5 34 76.5
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.3e-07 58.2 53 52.8
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 5.1e-07 57.0 43 69.8
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 6.7e-07 56.6 47 55.3
Sabra05G0003700 Salix brachista HOM05D000273 ORTHO05D000198 8.7e-07 56.2 37 64.9
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.5e-06 55.5 53 50.9
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.5e-06 55.5 53 50.9
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.5e-06 55.5 31 74.2


User provided reference genes

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