Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.1e-115 420.2 255 100.0
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 9.8e-80 300.8 258 69.4
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 1.8e-78 296.6 257 68.5
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.3e-76 290.4 361 56.0
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 8.6e-76 287.7 257 67.7
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.5e-75 284.3 362 56.6
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.7e-71 273.5 266 63.5
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 2.8e-71 272.7 255 74.1
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 5.0e-60 235.3 215 67.0
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 6.8e-57 224.9 272 62.9
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 3.4e-48 196.1 264 54.9
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 4.1e-46 189.1 253 58.5
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.7e-44 183.7 284 47.2
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 2.8e-42 176.4 284 46.8
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.6e-42 176.0 255 49.8
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 8.9e-41 171.4 251 47.8
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 8.9e-41 171.4 257 48.2
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 3.4e-40 169.5 253 47.0
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 4.4e-40 169.1 253 48.2
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.3e-39 167.5 249 48.2
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 2.2e-39 166.8 253 47.4
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.9e-39 166.4 176 58.5
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 8.4e-39 164.9 174 59.2
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.4e-38 163.3 263 44.1
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.2e-37 161.0 253 47.0
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 6.0e-37 158.7 173 58.4
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 6.0e-37 158.7 256 46.9
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 6.0e-37 158.7 250 47.2
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.3e-36 156.8 277 41.5
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 3.9e-36 156.0 255 47.1
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.1e-35 154.5 264 45.5
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.1e-35 154.5 273 42.1
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.3e-34 151.0 277 40.8
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.6e-34 150.6 273 41.8
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 2.8e-34 149.8 263 40.3
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 3.6e-34 149.4 274 41.6
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.4e-33 147.5 271 41.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.4e-33 147.5 259 42.1
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.8e-33 147.1 265 43.4
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.8e-33 147.1 265 43.4
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-32 144.4 171 55.6
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 5.8e-32 142.1 251 45.4
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 7.6e-32 141.7 196 49.0
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.6e-32 141.7 194 48.5
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 1.7e-31 140.6 255 43.1
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 2.9e-31 139.8 263 40.7
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.9e-31 139.8 274 40.1
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 6.4e-31 138.7 275 39.3
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.9e-30 137.1 195 47.2
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.2e-30 136.3 274 39.8
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.1e-30 135.2 195 46.2
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 9.3e-30 134.8 272 38.6
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 1.2e-29 134.4 277 40.1
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.2e-29 134.4 182 46.7
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 2.1e-29 133.7 268 38.8
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.7e-29 133.3 265 40.8
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 2.7e-29 133.3 272 39.0
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.6e-29 132.5 258 40.7
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 4.6e-29 132.5 263 38.8
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 6.0e-29 132.1 279 38.7
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 6.0e-29 132.1 279 38.7
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 6.0e-29 132.1 266 38.7
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 7.9e-29 131.7 267 40.4
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.0e-28 131.3 267 38.6
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 1.3e-28 131.0 266 37.6
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 6.6e-28 128.6 266 38.0
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 6.6e-28 128.6 274 38.3
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 8.7e-28 128.3 269 39.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 1.9e-27 127.1 266 38.3
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.5e-27 126.7 265 38.9
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.5e-27 126.7 265 38.9
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.3e-27 125.9 266 37.2
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.3e-27 125.9 268 37.7
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 5.6e-27 125.6 266 37.6
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 1.6e-26 124.0 270 39.3
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.1e-26 123.6 263 38.4
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 2.8e-26 123.2 277 39.0
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 4.8e-26 122.5 185 44.3
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.4e-25 120.9 274 38.7
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-25 120.9 251 38.6
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.4e-25 120.9 274 38.7
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.8e-25 120.6 177 49.7
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.8e-25 120.6 257 40.1
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.1e-25 119.8 274 38.7
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 4.0e-25 119.4 264 38.6
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 5.3e-25 119.0 257 39.7
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.9e-25 118.6 251 38.2
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.2e-24 117.9 261 37.2
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.5e-24 117.5 251 37.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.0e-24 117.1 251 38.2
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 2.0e-24 117.1 266 36.1
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.4e-24 116.3 181 43.1
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 3.4e-24 116.3 263 36.9
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.4e-24 116.3 190 44.7
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 5.8e-24 115.5 190 46.3
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 5.8e-24 115.5 265 37.7
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 9.9e-24 114.8 197 41.6
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 2.2e-23 113.6 265 36.6
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 2.9e-23 113.2 221 39.8
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 4.9e-23 112.5 172 45.9
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.4e-22 110.2 195 42.1
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 3.2e-22 109.8 191 42.4
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.2e-22 109.4 273 37.7
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 5.4e-22 109.0 268 38.4
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 5.4e-22 109.0 251 37.1
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 5.4e-22 109.0 180 44.4
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 9.3e-22 108.2 192 39.6
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.2e-21 107.8 195 40.5
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.6e-21 107.5 273 37.4
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 2.7e-21 106.7 263 36.5
BolC2t08091H Brassica oleracea HOM05D002831 ORTHO05D004341 3.5e-21 106.3 125 60.0
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 4.6e-21 105.9 198 39.9
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.6e-21 105.9 273 37.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 6.0e-21 105.5 196 39.8
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.0e-21 105.5 195 39.5
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 7.9e-21 105.1 83 73.5
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 7.9e-21 105.1 83 73.5
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.0e-20 104.8 178 41.6
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.0e-20 104.8 175 42.9
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 2.3e-20 103.6 262 36.3
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 3.9e-20 102.8 185 40.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 3.9e-20 102.8 177 42.4
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 5.1e-20 102.4 175 42.9
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 6.7e-20 102.1 237 37.1
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 6.7e-20 102.1 180 41.7
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 8.7e-20 101.7 250 36.4
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.1e-19 101.3 149 46.3
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 1.1e-19 101.3 174 41.4
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.1e-19 101.3 197 38.6
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.1e-19 101.3 200 41.5
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.5e-19 100.9 192 39.6
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 1.5e-19 100.9 257 37.4
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.9e-19 100.5 176 42.0
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 4.3e-19 99.4 190 38.9
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 4.3e-19 99.4 182 41.2
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 7.4e-19 98.6 176 39.8
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.4e-19 98.6 182 41.2
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 1.3e-18 97.8 196 38.3
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.3e-18 97.8 241 35.7
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.3e-18 97.8 190 38.4
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 2.1e-18 97.1 190 37.9
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 2.1e-18 97.1 186 40.9
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.8e-18 96.7 101 54.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 4.8e-18 95.9 274 34.3
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.4e-17 94.4 198 37.4
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.8e-17 94.0 198 37.4
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.4e-17 93.6 244 36.5
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 4.0e-17 92.8 147 42.9
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.2e-16 91.3 198 36.4
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 2.0e-16 90.5 196 36.2
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-16 90.5 196 36.2
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 2.6e-16 90.1 197 37.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.4e-16 89.7 120 49.2
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.8e-16 89.0 196 36.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.7e-15 87.4 196 35.7
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.2e-15 87.0 147 40.8
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.2e-15 87.0 191 37.2
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 2.9e-15 86.7 176 37.5
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.8e-15 86.3 196 35.2
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.1e-14 84.7 239 36.4
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.9e-14 84.0 196 35.2
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 7.9e-13 78.6 161 42.2
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.3e-12 77.8 183 35.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 1.8e-12 77.4 193 36.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.8e-12 77.4 186 39.2
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 6.7e-12 75.5 135 43.0
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 2.5e-11 73.6 192 35.9
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.5e-11 73.6 193 35.8
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.3e-11 73.2 184 34.2
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 5.7e-11 72.4 131 38.9
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.7e-11 72.4 153 35.9
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.3e-10 71.2 193 33.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.8e-10 70.1 127 38.6
C02p19540 Brassica napus HOM05D002831 ORTHO05D004341 3.7e-10 69.7 58 77.6
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.8e-09 67.4 138 42.8
BcaB03g12482 Brassica carinata HOM05D002831 ORTHO05D004341 2.0e-08 63.9 154 35.7
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.6e-08 63.5 85 48.2
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.0e-07 61.6 178 33.7
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.9e-07 60.1 192 33.3
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.8e-07 59.7 196 32.1
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 6.5e-07 58.9 130 33.1
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 8.4e-07 58.5 199 31.7
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 1.9e-06 57.4 176 31.2
Lj8C18T8 Lonicera japonica HOM05D002831 ORTHO05D004341 7.2e-06 55.5 41 80.5
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 9.3e-06 55.1 72 48.6


User provided reference genes

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