Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 0.0e+00 1554.3 785 100.0
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 0.0e+00 1108.6 838 73.4
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 5.4e-294 1014.2 797 71.4
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 2.3e-212 743.0 885 55.6
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 9.9e-171 604.7 843 48.0
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 1.1e-164 584.7 854 47.4
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.7e-162 577.4 866 47.9
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 8.4e-162 575.1 877 46.8
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 7.9e-160 568.5 871 47.9
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 1.0e-159 568.2 853 47.6
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 1.1e-158 564.7 876 46.9
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 2.8e-157 560.1 769 50.1
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 6.3e-149 532.3 819 46.4
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 2.4e-148 530.4 819 46.3
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 2.4e-148 530.4 819 46.3
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 3.1e-148 530.0 821 46.4
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 3.0e-143 513.5 835 44.9
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 2.4e-140 503.8 694 49.3
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 4.1e-140 503.1 821 45.6
BcaB08g35607 Brassica carinata HOM05D008661 ORTHO05D010872 7.7e-139 498.8 806 45.7
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.9e-138 496.9 774 46.6
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 3.2e-137 493.4 819 44.6
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 4.7e-128 463.0 814 43.4
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 4.8e-125 453.0 814 42.9
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 6.3e-125 452.6 622 49.8
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 3.4e-118 430.3 807 42.3
BcaC04g20572 Brassica carinata HOM05D008661 ORTHO05D010872 1.8e-116 424.5 790 42.3
A10p10120 Brassica napus HOM05D008661 ORTHO05D010872 1.4e-108 398.3 806 40.7
BraA10t43092Z Brassica rapa HOM05D008661 ORTHO05D010872 4.1e-108 396.7 806 40.4
C09p42020 Brassica napus HOM05D008661 ORTHO05D010872 7.0e-108 396.0 765 42.1
BolC9t57085H Brassica oleracea HOM05D008661 ORTHO05D010872 7.0e-108 396.0 765 42.1
BcaC04g20566 Brassica carinata HOM05D008661 ORTHO05D010872 1.6e-107 394.8 813 40.2
A10p10090 Brassica napus HOM05D008661 ORTHO05D010872 1.0e-106 392.1 800 40.8
A10p10100 Brassica napus HOM05D008661 ORTHO05D010872 1.5e-105 388.3 800 40.4
A10p10130 Brassica napus HOM05D008661 ORTHO05D010872 3.6e-80 303.9 803 35.9
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 5.2e-79 300.1 498 45.4
BraA10t43093Z Brassica rapa HOM05D008661 ORTHO05D010872 7.6e-78 296.2 803 35.5
BolC9t57086H Brassica oleracea HOM05D008661 ORTHO05D010872 2.7e-75 287.7 791 35.1
C09p42030 Brassica napus HOM05D008661 ORTHO05D010872 6.5e-45 186.8 461 36.0
BcaC04g20571 Brassica carinata HOM05D008661 ORTHO05D010872 7.9e-35 153.3 368 37.8
BcaC04g20567 Brassica carinata HOM05D008661 ORTHO05D010872 1.1e-31 142.9 479 30.3
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.1e-31 142.9 931 29.0
BcaC04g20569 Brassica carinata HOM05D008661 ORTHO05D010872 1.4e-31 142.5 347 36.6
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 9.1e-23 113.2 1044 26.3
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 9.4e-20 103.2 1041 26.6
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.1e-19 102.1 543 30.9
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.1e-19 102.1 583 30.0
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 4.7e-19 100.9 1047 26.2
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 1.7e-16 92.4 484 31.2
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 9.1e-15 86.7 799 26.2
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 9.1e-15 86.7 537 30.4
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 7.7e-14 83.6 402 25.6
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 2.9e-13 81.6 405 24.9
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 5.0e-13 80.9 536 29.7
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 4.2e-12 77.8 426 27.7
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 4.2e-12 77.8 426 27.7
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.2e-11 76.3 405 24.7
BcaC04g20568 Brassica carinata HOM05D008661 ORTHO05D010872 1.6e-11 75.9 133 42.9
BcaC04g20570 Brassica carinata HOM05D008661 ORTHO05D010872 2.1e-11 75.5 71 60.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.1e-11 75.5 405 25.7
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.7e-11 75.1 239 31.0
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.6e-11 74.7 231 30.3
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 8.0e-11 73.6 221 29.9
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.0e-10 73.2 239 31.4
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.4e-10 72.8 212 31.6
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.3e-10 72.0 80 46.2
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.0e-10 71.2 239 30.5
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 5.2e-10 70.9 230 29.6
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 5.2e-10 70.9 231 30.7
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 5.2e-10 70.9 330 27.0
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 8.8e-10 70.1 532 28.2
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.5e-09 69.3 239 30.5
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.5e-09 69.3 346 27.2
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.6e-09 68.6 294 27.9
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 2.6e-09 68.6 338 32.8
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.3e-09 68.2 228 28.9
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 4.4e-09 67.8 225 31.1
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 7.5e-09 67.0 666 26.7
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 7.5e-09 67.0 811 25.5
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 7.5e-09 67.0 666 26.7
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.3e-08 66.2 400 25.5
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.3e-08 66.2 294 28.6
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.7e-08 65.9 351 25.6
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 2.2e-08 65.5 542 28.2
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 3.7e-08 64.7 179 33.5
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 3.7e-08 64.7 1015 23.7
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 3.7e-08 64.7 219 28.8
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 3.7e-08 64.7 389 27.0
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.8e-08 64.3 80 43.8
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.8e-08 64.3 239 29.7
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 8.2e-08 63.5 384 26.3
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 8.2e-08 63.5 81 49.4
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-07 62.8 81 46.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.8e-07 62.4 338 25.7
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.1e-07 61.6 605 25.6
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 7.0e-07 60.5 195 29.7
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 7.0e-07 60.5 197 33.5
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 7.0e-07 60.5 81 48.1
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 1.2e-06 59.7 198 32.3
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.6e-06 59.3 79 50.6
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 2.0e-06 58.9 194 33.0
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 2.7e-06 58.5 398 25.1
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 4.5e-06 57.8 402 27.4
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.9e-06 57.4 171 31.0


User provided reference genes

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