Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 4.1e-99 364.8 189 100.0
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.4e-83 312.4 167 97.0
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.2e-80 301.6 164 95.1
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.0e-78 295.4 167 92.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 2.1e-71 272.7 157 87.9
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 6.0e-66 254.6 163 78.5
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.3e-65 253.4 163 77.9
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.7e-65 253.1 163 77.3
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.7e-65 253.1 163 77.3
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 8.6e-65 250.8 163 77.9
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 4.3e-64 248.4 135 93.3
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.1e-62 243.8 171 74.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.4e-62 243.4 163 74.8
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.1e-62 242.3 171 74.9
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.0e-61 239.6 163 77.3
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-60 236.9 171 72.5
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.9e-59 233.0 165 72.1
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 5.4e-59 231.5 148 77.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.4e-54 216.9 170 64.7
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 4.0e-54 215.3 135 78.5
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.9e-54 214.2 163 64.4
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-53 213.4 171 63.2
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 2.0e-53 213.0 165 62.4
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 3.4e-53 212.2 163 64.4
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.4e-53 212.2 136 79.4
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 4.4e-53 211.8 163 65.0
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 4.4e-53 211.8 172 65.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 9.9e-53 210.7 165 63.6
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-52 210.3 163 64.4
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-52 210.3 163 64.4
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.3e-52 210.3 163 66.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.3e-52 210.3 163 64.4
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.3e-52 210.3 163 63.8
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.7e-52 209.9 158 65.2
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.7e-52 209.9 163 64.4
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 2.2e-52 209.5 165 61.8
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 3.7e-52 208.8 163 64.4
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 3.7e-52 208.8 163 63.8
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.7e-52 208.8 165 63.6
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 4.9e-52 208.4 176 58.0
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.9e-52 208.4 163 64.4
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 6.4e-52 208.0 158 63.9
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 6.4e-52 208.0 165 63.0
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 8.3e-52 207.6 163 62.6
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.4e-51 206.8 163 65.6
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.9e-51 206.5 162 64.8
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 2.4e-51 206.1 163 63.8
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.2e-51 205.7 163 65.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-51 205.3 163 63.8
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 4.1e-51 205.3 165 62.4
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 5.4e-51 204.9 164 63.4
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 7.1e-51 204.5 158 62.7
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 9.2e-51 204.1 160 62.5
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.1e-50 203.0 154 64.3
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 2.7e-50 202.6 163 62.6
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 3.5e-50 202.2 163 62.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 6.0e-50 201.4 158 63.3
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 7.8e-50 201.1 158 64.6
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.8e-50 201.1 163 59.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 1.0e-49 200.7 160 63.1
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.7e-49 199.9 163 59.5
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.7e-49 199.9 163 59.5
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.7e-49 199.9 163 59.5
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.7e-49 199.9 163 59.5
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 2.3e-49 199.5 164 60.4
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 3.0e-49 199.1 154 63.6
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 3.0e-49 199.1 169 59.2
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 3.9e-49 198.7 159 62.3
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 8.6e-49 197.6 163 63.2
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 1.1e-48 197.2 158 60.8
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.5e-48 196.8 158 61.4
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 1.9e-48 196.4 163 60.1
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.9e-48 196.4 164 61.6
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.5e-48 196.1 157 61.1
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 4.3e-48 195.3 163 58.9
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 5.6e-48 194.9 165 60.6
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 5.6e-48 194.9 166 60.2
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 5.6e-48 194.9 163 58.9
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 5.6e-48 194.9 183 56.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 7.3e-48 194.5 158 62.0
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-47 193.7 163 58.9
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-47 193.7 163 58.9
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.2e-47 193.7 158 60.8
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-47 193.7 158 63.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.2e-47 193.7 136 69.1
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.6e-47 193.4 122 80.3
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.6e-47 193.4 148 64.9
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 2.1e-47 193.0 163 60.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 2.1e-47 193.0 163 57.1
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.8e-47 192.6 153 61.4
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.8e-47 192.6 163 58.9
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.8e-47 192.6 163 57.1
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 4.7e-47 191.8 158 59.5
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 6.2e-47 191.4 164 57.3
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 8.1e-47 191.0 161 60.2
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 4.0e-46 188.7 136 68.4
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 4.0e-46 188.7 166 54.8
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 6.8e-46 188.0 166 58.4
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 6.8e-46 188.0 184 54.9
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 2.6e-45 186.0 138 65.2
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.3e-44 183.7 185 52.4
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.9e-44 182.6 165 56.4
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.8e-44 182.2 172 61.6
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.8e-44 182.2 187 50.8
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 4.9e-44 181.8 163 55.2
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 2.4e-43 179.5 195 49.7
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 4.2e-43 178.7 165 57.6
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.3e-41 172.9 182 51.6
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 8.7e-41 171.0 134 61.9
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.5e-40 170.2 126 65.9
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.9e-40 169.9 140 57.1
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 2.5e-40 169.5 118 72.0
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.0e-38 162.2 175 50.3
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 9.0e-38 161.0 123 61.0
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.1e-35 154.1 113 67.3
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.2e-35 152.5 117 63.2
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 4.2e-35 152.1 111 66.7
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.2e-35 152.1 164 57.9
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 9.3e-35 151.0 117 64.1
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.6e-34 150.2 116 63.8
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.9e-32 143.3 118 61.0
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 5.6e-32 141.7 163 55.2
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 2.8e-31 139.4 132 56.1
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.0e-30 134.4 99 72.7
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.2e-29 134.0 116 59.5
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 3.4e-29 132.5 165 43.6
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 5.8e-29 131.7 125 53.6
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.9e-28 129.4 71 90.1
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.8e-28 129.0 79 87.3
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.9e-27 126.7 151 43.0
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.9e-27 126.7 145 48.3
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 3.2e-27 125.9 73 84.9
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 3.2e-27 125.9 73 84.9
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.2e-27 125.6 119 53.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 7.1e-27 124.8 88 67.0
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.0e-25 120.9 152 44.1
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.9e-24 116.7 134 50.7
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 2.6e-21 106.3 117 53.0
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 3.4e-21 105.9 89 53.9
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.7e-20 103.6 99 52.5
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.4e-19 100.5 71 66.2
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 9.3e-19 97.8 84 59.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 2.3e-17 93.2 69 62.3
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.4e-16 88.2 135 41.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-12 77.4 52 59.6
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.5e-11 73.2 59 61.0
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 6.1e-10 68.6 75 53.3
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.3e-09 67.4 67 52.2
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.2e-07 60.1 57 43.9
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 2.4e-06 56.6 54 63.0
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.1e-06 56.2 39 71.8
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-06 55.8 54 55.6
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 5.3e-06 55.5 50 54.0
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 9.0e-06 54.7 46 58.7


User provided reference genes

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