Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 1.8e-108 396.0 206 100.0
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 2.1e-93 345.9 207 87.0
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 1.3e-90 336.7 209 85.2
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 2.9e-90 335.5 206 84.0
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 2.1e-88 329.3 206 82.5
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 3.9e-87 325.1 206 81.6
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 5.1e-87 324.7 201 86.6
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 1.5e-86 323.2 206 80.6
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 1.9e-86 322.8 206 80.6
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 2.5e-86 322.4 206 81.1
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 6.9e-84 314.3 208 80.3
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 5.5e-81 304.7 205 75.6
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 1.6e-80 303.1 206 75.7
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 3.5e-80 302.0 198 79.8
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 4.6e-80 301.6 200 76.0
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 1.9e-78 296.2 198 74.7
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 4.3e-78 295.0 205 72.7
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 2.1e-77 292.7 198 73.2
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 3.7e-77 292.0 198 73.7
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 6.3e-77 291.2 207 72.0
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 1.1e-76 290.4 201 74.6
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 1.8e-76 289.7 202 71.8
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 2.6e-75 285.8 198 73.7
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 2.6e-75 285.8 206 70.9
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 7.6e-75 284.3 198 70.7
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 2.2e-74 282.7 196 73.0
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 2.2e-74 282.7 195 72.3
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 2.9e-74 282.3 206 69.4
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 3.8e-74 282.0 206 70.9
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 3.8e-74 282.0 197 71.6
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.0e-74 281.6 205 71.7
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.0e-74 281.6 205 71.7
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 6.5e-74 281.2 202 72.3
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 1.1e-73 280.4 205 71.2
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.4e-73 280.0 205 71.2
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 1.4e-73 280.0 205 71.2
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 1.9e-73 279.6 198 73.2
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.5e-73 279.3 205 71.2
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 3.2e-73 278.9 200 70.5
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 5.5e-73 278.1 206 70.9
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 9.3e-73 277.3 202 68.8
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 2.7e-72 275.8 199 71.4
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 7.9e-72 274.2 198 73.7
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 3.0e-71 272.3 198 72.2
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 3.0e-71 272.3 206 69.4
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 5.1e-71 271.6 201 69.2
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 1.9e-70 269.6 201 67.7
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.3e-70 268.5 205 69.8
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 7.4e-70 267.7 198 73.2
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 1.3e-69 266.9 198 71.7
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 1.6e-69 266.5 208 67.8
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 2.8e-69 265.8 206 69.4
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.4e-68 263.5 198 71.7
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 1.4e-68 263.5 196 68.9
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 3.1e-68 262.3 198 71.2
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 3.1e-68 262.3 200 69.5
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 5.3e-68 261.5 198 72.7
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 6.9e-68 261.2 200 69.5
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.2e-67 260.4 198 70.7
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 1.5e-67 260.0 198 72.7
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.6e-67 259.2 206 67.5
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 5.9e-67 258.1 206 67.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 2.9e-66 255.8 201 68.2
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 3.8e-66 255.4 195 70.3
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 5.0e-66 255.0 206 67.5
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.4e-65 253.4 203 66.5
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 1.4e-65 253.4 201 66.7
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 1.9e-65 253.1 202 67.3
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 2.5e-65 252.7 206 66.0
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 3.2e-65 252.3 196 67.9
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 9.4e-65 250.8 202 65.3
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 1.2e-64 250.4 202 67.3
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.2e-64 250.4 206 65.0
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 6.1e-64 248.1 206 65.0
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 3.0e-63 245.7 198 67.2
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 3.9e-63 245.4 215 62.8
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 2.0e-62 243.0 202 63.9
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 2.6e-62 242.7 206 65.5
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 3.3e-62 242.3 199 66.3
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 7.4e-62 241.1 210 61.4
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 7.4e-62 241.1 202 66.3
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 8.2e-61 237.7 199 65.3
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 8.2e-61 237.7 207 63.3
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 1.8e-60 236.5 143 85.3
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 6.9e-60 234.6 215 58.1
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 9.1e-60 234.2 214 58.9
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 5.9e-59 231.5 193 64.8
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 3.2e-57 225.7 198 62.1
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 4.2e-57 225.3 206 58.3
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.5e-54 216.9 183 63.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 2.6e-54 216.1 203 58.1
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 2.4e-52 209.5 185 60.5
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 9.1e-52 207.6 201 56.7
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.7e-48 196.1 205 53.7
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 2.7e-48 196.1 186 59.7
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 4.7e-48 195.3 203 54.7
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 1.8e-47 193.4 135 76.3
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 1.7e-45 186.8 195 54.4
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 2.5e-41 172.9 203 48.3
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.2e-40 170.6 212 47.2
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 3.6e-40 169.1 153 61.4
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 1.8e-39 166.8 163 58.3
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 2.7e-35 152.9 162 56.8
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 3.5e-35 152.5 101 78.2
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 2.2e-29 133.3 86 79.1
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 1.5e-22 110.5 116 53.4
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 9.2e-20 101.3 67 77.6
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 3.5e-19 99.4 67 76.1
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.9e-17 93.6 309 28.2
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 7.3e-17 91.7 60 76.7
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-15 87.8 74 63.5
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-15 87.4 74 64.9
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-15 87.4 74 64.9
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-15 87.4 74 64.9
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.8e-15 85.1 74 63.5
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 8.9e-15 84.7 104 52.9
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.2e-14 84.3 74 63.5
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.5e-14 84.0 74 62.2
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 2.0e-14 83.6 46 87.0
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.0e-14 83.6 74 62.2
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 3.5e-11 72.8 107 47.7
A01p23910 Brassica napus HOM05D006363 ORTHO05D007920 2.5e-09 66.6 47 72.3
BraA01t02298Z Brassica rapa HOM05D006363 ORTHO05D007920 2.5e-09 66.6 47 72.3
A03p67130 Brassica napus HOM05D006363 ORTHO05D007920 2.6e-06 56.6 45 64.4
BraA01t02765Z Brassica rapa HOM05D006363 ORTHO05D007920 2.6e-06 56.6 45 64.4


User provided reference genes

Program Settings