Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 2.8e-35 151.8 97 100.0
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.9e-32 141.0 70 94.3
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.4e-31 138.7 70 92.9
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 4.2e-31 137.9 70 92.9
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 2.1e-30 135.6 70 87.1
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 2.1e-30 135.6 70 87.1
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.9e-30 133.7 70 88.6
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-29 133.3 70 85.7
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 1.0e-29 133.3 70 85.7
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 1.1e-28 129.8 70 85.7
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.9e-28 129.0 68 86.8
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 2.5e-28 128.6 66 87.9
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 5.6e-28 127.5 70 84.3
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 5.6e-28 127.5 70 84.3
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 5.6e-28 127.5 70 84.3
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 7.4e-28 127.1 70 84.3
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 7.4e-28 127.1 70 84.3
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 7.4e-28 127.1 70 84.3
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.3e-24 116.3 67 76.1
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 7.9e-22 107.1 67 70.1
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 2.1e-19 99.0 66 60.6
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.8e-19 98.6 67 64.2
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 2.8e-19 98.6 67 64.2
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 2.8e-19 98.6 67 64.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.7e-19 98.2 67 61.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.4e-18 96.3 64 60.9
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 3.1e-18 95.1 67 59.7
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.0e-18 94.7 64 64.1
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 5.3e-18 94.4 63 65.1
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.2e-17 93.2 67 56.7
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.2e-17 93.2 63 61.9
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-17 92.8 67 56.7
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.0e-17 92.4 63 60.3
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 2.6e-17 92.0 64 60.9
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.6e-17 92.0 62 61.3
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 3.4e-17 91.7 68 60.3
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 3.4e-17 91.7 62 59.7
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 4.5e-17 91.3 63 58.7
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 4.5e-17 91.3 63 61.9
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 5.8e-17 90.9 65 56.9
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 7.6e-17 90.5 65 55.4
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.0e-16 90.1 64 59.4
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.0e-16 90.1 62 61.3
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.0e-16 90.1 69 53.6
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 63 57.1
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 65 60.0
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.3e-16 89.7 63 57.1
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.3e-16 89.7 62 61.3
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.7e-16 89.4 63 55.6
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.7e-16 89.4 67 53.7
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.7e-16 89.4 68 52.9
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 1.7e-16 89.4 67 59.7
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 1.7e-16 89.4 64 60.9
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.7e-16 89.4 62 61.3
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.2e-16 89.0 63 57.1
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 3.8e-16 88.2 69 58.0
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 3.8e-16 88.2 63 57.1
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 4.9e-16 87.8 64 59.4
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 8.4e-16 87.0 62 56.5
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 8.4e-16 87.0 63 65.1
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 8.4e-16 87.0 63 65.1
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.4e-15 86.3 64 59.4
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 1.4e-15 86.3 67 50.7
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.4e-15 86.3 62 58.1
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.4e-15 86.3 64 56.2
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.9e-15 85.9 63 54.0
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 2.5e-15 85.5 61 63.9
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.5e-15 85.5 64 51.6
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 3.2e-15 85.1 65 56.9
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 3.2e-15 85.1 62 56.5
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.2e-15 85.1 64 54.7
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 3.2e-15 85.1 64 54.7
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 3.2e-15 85.1 69 50.7
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.2e-15 84.7 63 57.1
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.2e-15 84.7 63 57.1
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.2e-15 84.7 63 57.1
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 4.2e-15 84.7 71 56.3
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 5.5e-15 84.3 62 54.8
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 5.5e-15 84.3 68 51.5
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 9.3e-15 83.6 65 47.7
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 9.3e-15 83.6 65 47.7
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 9.3e-15 83.6 65 53.8
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 9.3e-15 83.6 64 53.1
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 9.3e-15 83.6 64 53.1
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.2e-14 83.2 61 62.3
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.2e-14 83.2 62 56.5
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.6e-14 82.8 61 57.4
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 66 51.5
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 3.5e-14 81.6 66 51.5
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 4.6e-14 81.3 64 54.7
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 4.6e-14 81.3 62 58.1
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 4.6e-14 81.3 67 49.3
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.6e-14 81.3 63 61.9
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 6.0e-14 80.9 64 54.7
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 6.0e-14 80.9 62 58.1
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.0e-14 80.9 63 54.0
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.0e-13 80.1 62 56.5
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 1.0e-13 80.1 63 61.9
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 1.0e-13 80.1 64 50.0
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 1.3e-13 79.7 62 54.8
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.3e-13 79.7 70 52.9
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.8e-13 79.3 70 52.9
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 3.0e-13 78.6 65 50.8
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 6.7e-13 77.4 65 50.8
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.7e-13 77.4 63 52.4
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 4.3e-12 74.7 65 52.3
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 5.7e-12 74.3 66 47.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.6e-11 72.8 67 43.3
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 2.2e-11 72.4 52 53.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.8e-11 72.0 68 45.6
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 2.8e-11 72.0 56 55.4
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 1.4e-10 69.7 66 42.4
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.4e-10 69.7 67 41.8
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.8e-10 69.3 66 43.9
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 1.8e-10 69.3 65 47.7
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.3e-10 67.8 66 40.9
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 6.9e-10 67.4 67 40.3
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-09 66.6 67 40.3
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-09 66.6 67 40.3
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-09 66.6 67 40.3
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.2e-09 66.6 67 40.3
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.2e-09 66.6 67 40.3
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.2e-09 66.6 63 47.6
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 1.2e-09 66.6 62 50.0
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-09 66.2 64 42.2
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.9e-09 64.3 66 36.4
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 5.9e-09 64.3 66 40.9
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 5.9e-09 64.3 65 46.2
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.7e-08 62.8 67 40.3
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.4e-07 59.7 62 43.5
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 2.5e-07 58.9 66 42.4
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.6e-06 56.2 67 41.8


User provided reference genes

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