Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.9e-162 575.1 274 100.0
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.9e-122 442.2 271 76.4
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 8.3e-85 317.8 215 69.3
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.0e-79 298.9 273 54.9
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.7e-77 293.5 280 53.2
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.0e-75 286.6 312 47.8
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 3.9e-74 282.3 257 55.6
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.1e-72 276.6 302 47.4
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.7e-69 266.9 308 46.8
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 2.1e-67 260.0 304 46.1
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.0e-66 256.1 280 48.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-65 252.3 272 47.8
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-65 252.3 272 47.8
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.2e-64 250.8 324 43.8
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 6.2e-64 248.4 290 46.9
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 8.1e-64 248.1 290 46.6
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-63 246.9 273 47.6
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 4.0e-63 245.7 308 44.8
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 8.9e-63 244.6 274 49.6
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.0e-62 243.4 282 46.5
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.0e-58 229.6 280 45.0
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 3.3e-57 226.1 287 44.3
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 4.3e-57 225.7 283 44.9
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.8e-55 220.3 279 41.9
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.3e-53 214.2 258 45.0
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.5e-49 200.7 260 43.8
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-49 200.3 258 43.8
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-49 200.3 258 43.8
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.6e-49 198.7 362 35.9
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 5.6e-49 198.7 362 35.9
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.8e-47 193.7 366 34.2
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 4.0e-47 192.6 362 37.0
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.5e-46 189.1 366 32.8
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.8e-46 188.7 356 35.1
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 9.9e-46 188.0 323 34.7
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.2e-45 186.8 350 34.6
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 2.2e-45 186.8 348 34.8
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.4e-44 184.1 365 32.1
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.4e-44 184.1 362 33.4
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 4.2e-44 182.6 263 40.3
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 5.4e-44 182.2 179 50.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 5.4e-44 182.2 179 50.3
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 5.4e-44 182.2 288 35.4
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.6e-43 180.6 329 33.4
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 3.5e-43 179.5 175 50.3
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 3.5e-43 179.5 384 32.6
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 4.6e-43 179.1 214 42.5
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 6.0e-43 178.7 342 33.6
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.0e-42 177.9 364 32.7
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.0e-42 177.9 344 32.8
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.0e-42 177.9 366 32.8
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.8e-42 177.2 361 31.3
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 2.3e-42 176.8 178 48.9
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 3.0e-42 176.4 202 46.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 3.9e-42 176.0 319 33.9
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.9e-42 176.0 319 33.9
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.9e-42 176.0 319 34.8
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 3.9e-42 176.0 230 38.7
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 5.1e-42 175.6 196 42.9
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 5.1e-42 175.6 211 43.6
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 6.7e-42 175.3 178 45.5
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.1e-41 174.5 326 32.8
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.1e-41 174.5 189 43.9
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.5e-41 174.1 319 34.2
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.5e-41 174.1 193 43.0
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 2.5e-41 173.3 352 32.4
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.5e-41 173.3 195 39.5
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.5e-41 173.3 196 45.4
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.5e-41 173.3 177 47.5
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 4.3e-41 172.6 189 41.3
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 5.6e-41 172.2 276 40.6
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 5.6e-41 172.2 195 43.6
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 5.6e-41 172.2 359 31.5
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 9.6e-41 171.4 255 38.8
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 9.6e-41 171.4 359 31.2
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 2.8e-40 169.9 329 32.8
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.7e-40 169.5 365 30.7
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 6.2e-40 168.7 197 42.6
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 8.1e-40 168.3 196 43.9
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-39 167.2 178 46.1
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.8e-39 167.2 194 40.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 4.0e-39 166.0 200 42.0
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 5.3e-39 165.6 323 31.3
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 6.9e-39 165.2 185 44.9
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.2e-38 164.5 323 33.7
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.5e-38 164.1 206 41.3
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.6e-38 163.3 233 39.9
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.4e-38 162.9 244 38.9
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 4.5e-38 162.5 236 37.3
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 5.8e-38 162.2 343 32.4
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 3.8e-37 159.5 342 30.7
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.1e-36 157.9 191 40.3
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.9e-36 157.1 362 29.3
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.9e-36 157.1 272 33.1
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.4e-36 156.8 173 41.6
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 4.2e-36 156.0 358 29.9
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 5.5e-36 155.6 180 44.4
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 3.5e-35 152.9 178 43.8
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 4.6e-35 152.5 207 39.6
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 6.0e-35 152.1 207 43.0
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 6.0e-35 152.1 207 43.0
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 6.0e-35 152.1 207 39.6
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 6.0e-35 152.1 275 34.5
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 7.9e-35 151.8 188 36.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-34 150.2 210 38.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-34 150.2 192 40.6
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 3.0e-34 149.8 172 43.0
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.1e-33 147.9 186 40.3
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 1.5e-33 147.5 229 35.8
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 3.3e-33 146.4 198 39.4
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 3.3e-33 146.4 320 32.5
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 7.4e-33 145.2 190 37.9
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.3e-32 144.4 207 37.2
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.6e-32 144.1 168 41.7
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 4.8e-32 142.5 221 35.7
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 8.2e-32 141.7 258 34.1
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 8.2e-32 141.7 198 37.4
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.4e-31 141.0 176 38.6
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 3.1e-31 139.8 157 43.9
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 4.0e-31 139.4 189 38.1
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.2e-30 137.9 188 39.4
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.5e-30 137.5 435 25.5
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.0e-30 137.1 193 37.8
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.4e-30 136.3 179 38.5
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 4.5e-30 136.0 223 34.5
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 2.2e-29 133.7 232 36.2
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 3.8e-29 132.9 180 36.7
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 8.4e-29 131.7 434 24.7
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.1e-28 131.3 190 36.3
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-28 129.4 207 36.7
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 5.5e-28 129.0 154 40.3
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 4.6e-27 125.9 196 37.8
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.3e-26 124.4 258 29.5
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 3.9e-26 122.9 220 35.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 8.7e-26 121.7 329 28.6
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 7.4e-25 118.6 285 28.1
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 7.4e-25 118.6 220 35.5
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 3.7e-24 116.3 290 29.7
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 4.1e-23 112.8 152 38.2
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 3.4e-22 109.8 292 29.5
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.1e-20 104.8 207 34.3
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.1e-20 104.8 224 29.5
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.1e-20 104.8 99 48.5
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.4e-20 104.4 235 31.5
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.1e-19 100.5 168 32.7
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 3.6e-19 99.8 124 37.1
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 6.1e-19 99.0 172 33.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 6.1e-19 99.0 164 34.1
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.7e-18 95.5 117 42.7
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.3e-17 93.2 97 42.3
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.7e-16 90.9 135 35.6
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-14 84.7 157 31.2
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.4e-12 77.8 126 35.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 5.5e-12 75.9 112 34.8
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 1.8e-10 70.9 125 32.0
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.8e-10 70.9 193 29.5
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.1e-10 69.3 107 34.6
SHI00611 Sapria himalayana HOM05D003860 ORTHO05D004218 4.1e-07 59.7 37 67.6
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 2.6e-06 57.0 37 62.2
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.5e-06 56.2 71 39.4


User provided reference genes

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