Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 7.8e-129 463.8 228 100.0
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 6.0e-121 437.6 228 94.3
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 6.2e-118 427.6 228 91.7
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 3.4e-116 421.8 232 90.9
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 7.8e-113 410.6 231 88.3
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 6.2e-110 401.0 235 85.5
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 6.2e-110 401.0 235 85.5
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 8.1e-110 400.6 233 85.8
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 8.1e-110 400.6 233 85.8
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 8.1e-110 400.6 233 85.8
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 2.9e-107 392.1 235 84.7
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 2.6e-100 369.0 231 78.4
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 6.0e-97 357.8 199 88.9
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 5.8e-92 341.3 220 77.3
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.3e-91 340.1 220 76.8
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 6.4e-91 337.8 228 73.2
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 8.4e-91 337.4 229 76.4
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 1.1e-90 337.0 220 75.9
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.4e-90 336.7 220 75.9
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.2e-90 335.5 220 75.9
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 4.2e-90 335.1 220 75.9
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 5.5e-90 334.7 226 73.0
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 7.1e-90 334.3 234 71.8
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 7.1e-90 334.3 225 75.1
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 3.5e-89 332.0 227 73.1
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.6e-89 331.6 224 74.6
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 4.6e-89 331.6 224 74.6
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 1.0e-88 330.5 235 70.2
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.8e-88 329.7 220 75.9
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.0e-88 328.9 228 71.5
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 3.9e-88 328.6 220 74.1
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 6.7e-88 327.8 222 74.3
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 1.1e-87 327.0 236 69.9
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 1.1e-87 327.0 234 71.4
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 1.1e-87 327.0 227 71.4
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 1.5e-87 326.6 221 72.9
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 3.3e-87 325.5 219 72.6
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 3.3e-87 325.5 220 75.0
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 5.7e-87 324.7 221 72.4
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 9.6e-87 323.9 219 73.1
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 1.3e-86 323.6 220 74.5
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 2.1e-86 322.8 221 71.9
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 2.8e-86 322.4 221 71.0
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 6.2e-86 321.2 221 72.4
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 8.2e-86 320.9 230 70.4
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 8.2e-86 320.9 228 69.3
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 1.1e-85 320.5 232 70.7
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 1.4e-85 320.1 227 69.6
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 2.4e-85 319.3 220 73.2
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 3.1e-85 318.9 219 72.1
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 3.1e-85 318.9 223 71.7
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 5.3e-85 318.2 222 71.2
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 5.3e-85 318.2 220 71.4
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 5.3e-85 318.2 219 70.8
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 6.9e-85 317.8 219 70.8
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 9.0e-85 317.4 220 71.8
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 1.2e-84 317.0 220 73.2
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 1.5e-84 316.6 221 71.5
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 1.5e-84 316.6 221 71.5
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 2.0e-84 316.2 219 70.3
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 3.4e-84 315.5 219 69.9
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 5.8e-84 314.7 220 71.8
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 7.6e-84 314.3 222 70.7
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 7.6e-84 314.3 226 68.1
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 7.6e-84 314.3 222 71.6
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.0e-83 313.9 220 71.8
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 1.3e-83 313.5 228 69.3
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 1.3e-83 313.5 226 68.1
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 1.7e-83 313.2 229 68.1
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 2.2e-83 312.8 221 69.2
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 2.2e-83 312.8 219 69.4
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 2.2e-83 312.8 224 70.1
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 2.9e-83 312.4 220 71.4
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 8.4e-83 310.8 219 71.2
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 8.4e-83 310.8 226 67.7
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 1.1e-82 310.5 219 69.9
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.1e-82 310.5 228 69.7
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.4e-82 310.1 219 71.2
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.9e-82 309.7 221 69.2
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.5e-82 309.3 219 70.8
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 9.3e-82 307.4 234 65.8
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 1.6e-81 306.6 200 76.0
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 1.6e-81 306.6 209 71.3
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 4.6e-81 305.1 222 68.5
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 2.3e-80 302.8 221 65.6
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 3.0e-80 302.4 220 67.3
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 4.3e-79 298.5 210 68.1
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 4.3e-79 298.5 197 76.1
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 5.7e-79 298.1 220 67.7
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 9.7e-79 297.4 223 65.5
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 1.3e-78 297.0 217 67.7
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 2.4e-77 292.7 221 66.1
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 9.0e-77 290.8 232 66.4
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.2e-76 290.4 197 74.6
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.2e-76 290.4 197 72.1
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 1.2e-76 290.4 209 70.8
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 2.1e-73 279.6 198 70.7
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 6.1e-73 278.1 209 67.9
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 7.9e-73 277.7 220 64.1
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 7.9e-73 277.7 223 61.9
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 6.9e-69 264.6 208 63.9
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 1.9e-66 256.5 228 56.6
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 1.0e-64 250.8 180 71.1
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 5.1e-64 248.4 220 57.7
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 1.5e-63 246.9 196 62.2
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 2.6e-63 246.1 206 61.7
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 7.4e-63 244.6 193 65.8
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.7e-59 233.4 204 60.8
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 9.4e-58 227.6 225 51.1
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 1.8e-56 223.4 146 76.0
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 3.0e-56 222.6 248 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 7.4e-55 218.0 205 54.6
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 4.8e-54 215.3 220 51.4
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 1.6e-52 210.3 142 76.1
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 3.0e-48 196.1 182 56.0
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 5.2e-48 195.3 195 53.3
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 8.5e-43 177.9 128 69.5
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 1.7e-27 127.1 186 39.2
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 8.6e-27 124.8 210 36.7
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 5.8e-23 112.1 253 32.4
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 5.4e-21 105.5 186 38.2
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 2.7e-20 103.2 74 64.9
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 5.0e-19 99.0 204 32.8
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 1.9e-13 80.5 62 61.3
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 2.4e-13 80.1 50 70.0
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 4.6e-12 75.9 66 59.1
CARHR264780 Cardamine hirsuta HOM05D006286 ORTHO05D007741 3.3e-10 69.7 34 91.2
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 8.1e-09 65.1 34 82.4
MCO01G267 Micromonas commoda HOM05D049972 ORTHO05D049270 6.8e-08 62.0 217 23.5
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 9.9e-07 58.2 156 34.0


User provided reference genes

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