Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1891.3 972 100.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1686.4 978 89.1
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1632.5 982 87.2
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1587.4 982 84.0
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1573.9 983 84.3
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1553.9 981 82.7
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1531.2 977 81.9
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1529.6 977 81.8
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1505.3 978 80.2
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1505.3 978 80.2
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1498.8 977 81.9
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1496.9 978 79.8
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1491.5 977 81.6
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1467.6 978 79.9
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1438.7 978 77.5
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1429.5 977 79.2
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 0.0e+00 1083.9 870 64.4
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 7.6e-282 974.2 670 77.9
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 1.4e-280 969.9 980 54.4
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 2.1e-279 966.1 964 55.1
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 6.9e-275 951.0 1025 53.1
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 4.4e-274 948.3 1037 51.3
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 2.9e-273 945.7 1010 53.8
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 1.1e-272 943.7 1038 51.1
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.6e-271 939.9 1010 52.6
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 1.3e-270 936.8 1018 53.4
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.5e-269 933.3 963 54.3
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.9e-269 932.9 945 54.4
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 1.9e-269 932.9 1020 52.6
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.3e-268 930.2 1020 51.4
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 2.1e-268 929.5 938 53.8
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 8.1e-268 927.5 987 53.8
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 1.4e-267 926.8 1040 50.6
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 1.4e-267 926.8 987 53.7
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 1.4e-267 926.8 948 53.9
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 4.0e-267 925.2 1032 51.4
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 5.8e-266 921.4 995 51.9
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 2.9e-265 919.1 994 52.3
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.4e-265 917.5 1015 51.8
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 9.3e-264 914.1 1015 51.3
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 9.3e-264 914.1 961 52.9
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.7e-263 912.5 1015 51.6
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 3.5e-263 912.1 952 54.1
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 7.9e-263 911.0 937 53.9
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 5.1e-262 908.3 955 53.9
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 8.7e-262 907.5 951 53.7
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.1e-261 907.1 995 51.4
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 5.6e-261 904.8 1012 51.1
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.6e-260 903.3 959 52.1
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 2.1e-260 902.9 949 52.3
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 2.1e-260 902.9 876 54.7
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 4.8e-260 901.7 1021 51.1
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 1.8e-259 899.8 1022 50.2
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 3.1e-259 899.0 1028 50.1
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 5.3e-259 898.3 996 52.3
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 5.3e-259 898.3 1009 50.5
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 6.9e-259 897.9 976 51.9
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 6.5e-257 891.3 916 53.6
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 1.5e-253 880.2 876 53.4
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.9e-253 879.8 858 54.9
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 5.7e-253 878.2 923 52.5
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 4.8e-252 875.2 923 52.4
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.5e-250 870.2 968 48.7
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 1.0e-249 867.5 974 49.8
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.1e-248 864.0 975 50.1
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 3.2e-248 862.4 1050 49.4
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 4.2e-248 862.1 1041 49.0
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 5.5e-248 861.7 958 51.4
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 6.1e-247 858.2 968 50.5
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 6.1e-247 858.2 1003 49.2
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 1.1e-245 854.0 884 51.6
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.5e-245 853.6 1035 49.0
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 4.3e-245 852.0 886 51.5
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.7e-244 849.0 1012 49.1
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 3.7e-244 849.0 882 53.1
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 2.4e-243 846.3 972 51.0
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 3.1e-243 845.9 942 50.3
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.9e-243 844.7 982 49.6
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 7.2e-240 834.7 960 50.6
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.0e-238 830.9 1029 48.8
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 3.1e-235 819.3 982 49.7
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.5e-234 817.0 951 50.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 5.9e-234 815.1 980 49.1
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 2.1e-231 806.6 970 46.8
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 1.8e-230 803.5 864 50.3
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.3e-230 803.1 867 53.1
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 6.7e-230 801.6 842 51.5
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 9.1e-227 791.2 867 49.9
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 7.7e-226 788.1 856 50.2
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 9.4e-224 781.2 1026 45.0
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 8.2e-220 768.1 971 45.3
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.4e-219 766.5 1020 45.6
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.8e-214 750.4 848 47.6
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.0e-214 749.6 713 56.5
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 2.6e-213 746.5 982 46.5
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 6.3e-212 741.9 969 45.9
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 9.4e-208 728.0 794 51.1
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 5.7e-205 718.8 804 49.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 8.3e-196 688.3 785 48.7
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 3.6e-191 672.9 972 41.9
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.2e-181 641.3 539 59.7
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 5.8e-181 639.0 551 58.4
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.1e-176 624.8 634 51.4
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 7.3e-176 622.1 546 57.9
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 3.1e-166 590.1 623 50.4
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 4.2e-155 553.1 406 67.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 6.1e-122 443.0 483 47.0
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 9.1e-118 429.1 394 56.9
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 2.2e-92 344.7 470 48.5
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.7e-71 274.2 516 39.0
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 2.0e-69 268.5 413 46.2
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.7e-53 214.9 315 39.7
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 8.7e-44 183.3 471 29.7
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.3e-43 180.3 471 29.3
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.3e-43 180.3 471 29.3
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.1e-42 178.7 157 51.0
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.6e-42 177.9 424 30.0
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.0e-36 159.8 118 66.9
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.0e-36 159.8 118 66.9
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.8e-34 151.0 485 27.6
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 8.4e-31 140.2 198 40.9
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 9.6e-27 126.7 401 28.7
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-26 126.3 319 29.8
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.5e-21 108.2 481 26.0
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.3e-20 105.5 476 25.6
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.2e-13 83.2 148 33.8
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.3e-12 79.0 68 64.7
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 9.1e-09 67.0 367 22.3
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.2e-08 66.6 492 22.2
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 2.0e-08 65.9 102 40.2
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.0e-07 63.5 371 21.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.1e-06 60.1 153 27.5
Nitab4.5_0000049g0070 Nicotiana tabacum HOM05D002537 ORTHO05D002751 2.5e-06 58.9 101 32.7
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 3.2e-06 58.5 137 29.2
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 3.2e-06 58.5 72 34.7
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 4.2e-06 58.2 101 31.7
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 7.2e-06 57.4 78 34.6
RhsimUnG0101800 Rhododendron simsii HOM05D002537 ORTHO05D002751 7.2e-06 57.4 151 27.8
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 7.2e-06 57.4 72 36.1
A05p11980 Brassica napus HOM05D002537 ORTHO05D002751 9.4e-06 57.0 106 32.1
BraA05t20141Z Brassica rapa HOM05D002537 ORTHO05D002751 9.4e-06 57.0 106 32.1


User provided reference genes

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