Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 2118.2 1069 100.0
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1960.7 1079 90.4
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1952.9 1062 92.2
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1946.0 1067 91.9
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1936.8 1076 90.7
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1870.9 1076 87.4
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1870.5 1072 87.7
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1864.0 1073 87.4
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1857.0 1072 86.9
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1797.7 1067 85.4
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1795.4 1079 84.2
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1760.3 956 92.4
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1597.0 1074 74.1
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1593.2 1065 74.6
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1585.5 1072 73.4
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1585.1 1068 74.6
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1578.9 1081 71.9
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1577.0 1076 73.6
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1575.8 1086 73.8
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1573.5 1082 72.8
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1573.5 1087 71.8
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1566.2 1104 71.5
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1566.2 1083 71.9
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1564.3 1065 73.9
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1563.1 1078 74.0
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1551.2 1089 73.5
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1551.2 1064 73.3
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1550.8 1070 72.6
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1546.9 1064 73.2
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1538.1 1074 71.3
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1537.3 1086 73.0
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1533.1 1087 70.0
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1528.5 1080 70.6
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1525.4 1067 71.9
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1520.8 1087 70.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1519.6 1077 69.4
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1518.1 1098 68.9
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1514.2 1064 70.4
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1512.7 1077 73.0
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1512.7 1077 70.0
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1511.5 1066 70.3
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1509.6 1069 70.0
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1508.8 1070 69.8
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1506.9 1080 71.2
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1504.2 1069 70.8
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1503.8 1075 69.8
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1503.0 1059 71.9
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1501.5 1073 71.5
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1075 69.7
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1499.6 1077 69.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1498.8 1082 70.4
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1496.5 1063 70.9
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1495.7 1066 70.4
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1494.6 1070 71.1
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1491.5 1071 70.0
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1489.9 1069 69.3
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1489.6 1063 70.6
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1488.0 1073 71.2
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1486.9 1061 71.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1486.5 1073 71.5
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1485.3 1071 69.8
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1483.4 1070 69.4
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1478.8 1062 68.6
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1475.7 1071 68.0
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1473.0 1075 69.3
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1471.1 1075 69.1
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1469.9 1078 68.1
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1469.1 1075 69.0
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1467.6 1106 67.0
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1461.4 1072 69.6
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1460.7 1073 69.3
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1460.3 1080 68.4
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1451.4 1069 69.3
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1449.5 1076 68.9
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1442.6 1066 69.9
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1432.5 1067 68.4
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1432.5 1082 67.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1426.4 1072 68.7
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1424.1 1066 68.3
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1410.6 1063 69.0
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1401.7 1074 67.6
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1393.3 975 72.4
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1380.2 1204 61.0
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1361.3 1072 65.3
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1358.6 1119 63.2
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1355.1 1086 66.3
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1345.5 1078 62.9
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1305.8 1078 61.8
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1283.1 934 69.6
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1281.2 1071 60.6
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1265.0 1200 56.8
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1168.7 1058 57.5
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1146.3 957 63.9
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1132.5 756 73.7
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1116.3 1072 59.0
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1095.1 753 72.4
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.3e-295 1020.0 718 72.7
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 8.6e-295 1017.3 754 69.0
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 4.0e-284 981.9 537 92.0
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 6.2e-277 958.0 1070 48.4
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 3.8e-266 922.2 1067 47.6
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 2.1e-264 916.4 1013 54.4
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.6e-248 863.6 505 85.1
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 2.5e-238 829.7 606 69.1
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.4e-236 823.2 779 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 3.3e-230 802.7 1007 45.3
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 3.5e-187 659.8 668 54.8
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 2.3e-186 657.1 1512 32.1
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 5.6e-161 572.8 395 73.2
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 3.2e-132 477.2 330 71.5
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 3.5e-78 297.7 201 71.6
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 6.6e-53 213.8 163 66.9
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 5.2e-42 177.6 106 81.1
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.9e-23 115.9 59 83.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 2.8e-19 102.1 63 73.0
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 1.5e-12 79.7 65 53.8
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.1e-10 72.0 46 63.0
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.1e-10 72.0 46 63.0
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 2.0e-09 69.3 199 27.6
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.2e-07 62.0 40 65.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 2.7e-06 58.9 73 42.5
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 6.0e-06 57.8 73 41.1


User provided reference genes

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