Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 3.2e-104 381.7 186 100.0
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.0e-94 350.1 189 89.4
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 5.6e-93 344.4 189 90.5
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 4.5e-90 334.7 189 87.8
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 7.1e-88 327.4 189 86.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.3e-85 318.2 186 84.9
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 5.3e-83 311.2 189 83.1
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 9.0e-83 310.5 189 82.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.0e-82 309.3 193 81.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 7.6e-82 307.4 189 82.5
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.9e-81 305.4 189 81.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 6.4e-81 304.3 189 82.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 9.3e-80 300.4 189 76.2
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 6.0e-79 297.7 190 78.9
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 3.0e-78 295.4 198 78.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 9.6e-77 290.4 205 71.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.4e-75 286.6 189 76.7
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 7.2e-64 247.7 187 64.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 3.9e-62 241.9 184 66.8
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.7e-62 241.1 185 64.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 8.8e-62 240.7 190 64.2
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.7e-61 238.0 183 62.8
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.3e-60 236.9 184 63.0
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.7e-60 236.5 183 62.3
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.8e-60 235.0 183 61.2
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 4.8e-60 235.0 183 61.2
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.1e-59 233.8 190 62.1
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.1e-59 233.8 183 61.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.8e-59 233.0 183 61.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 4.1e-59 231.9 186 62.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 6.9e-59 231.1 185 60.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.1e-59 230.7 183 60.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.1e-59 230.7 184 63.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.4e-58 228.8 140 76.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.4e-58 228.8 187 63.6
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 4.5e-58 228.4 185 60.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.7e-57 226.5 219 52.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.7e-57 226.5 185 58.9
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.2e-57 226.1 140 73.6
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 2.2e-57 226.1 186 59.7
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.9e-57 225.7 185 60.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 2.9e-57 225.7 188 59.6
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.0e-57 224.9 172 64.0
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.4e-56 223.4 195 57.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.4e-56 223.4 187 58.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.9e-56 223.0 135 74.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.5e-56 222.6 141 71.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.2e-56 221.9 183 57.9
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 4.2e-56 221.9 114 92.1
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.5e-56 221.5 189 58.2
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 5.5e-56 221.5 190 57.9
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 9.4e-56 220.7 187 60.4
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 9.4e-56 220.7 133 75.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.2e-55 220.3 183 60.7
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.1e-55 219.5 159 63.5
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.1e-55 219.5 184 59.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.1e-55 219.5 141 70.9
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.7e-55 219.2 183 60.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.7e-55 219.2 130 78.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.6e-55 218.8 156 62.8
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.6e-55 218.8 133 73.7
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.6e-55 218.8 192 59.4
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.6e-55 218.8 194 57.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.0e-54 217.2 133 74.4
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.4e-54 216.9 185 57.3
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.4e-54 216.9 135 73.3
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.8e-54 216.5 159 62.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.8e-54 216.5 183 56.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.3e-54 216.1 164 62.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 3.0e-54 215.7 186 55.9
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.0e-54 215.7 192 58.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 5.1e-54 214.9 159 62.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.1e-54 214.9 183 56.8
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.7e-54 214.5 183 57.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 6.7e-54 214.5 133 71.4
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 8.8e-54 214.2 141 68.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.5e-53 213.4 183 56.8
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.5e-53 213.4 145 71.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.5e-53 213.4 184 56.5
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.0e-53 213.0 183 56.8
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.0e-53 213.0 194 55.7
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.0e-53 213.0 183 56.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.6e-53 212.6 189 57.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 4.4e-53 211.8 153 65.4
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.3e-52 210.3 138 68.1
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.7e-52 208.8 135 72.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 3.7e-52 208.8 135 70.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 4.8e-52 208.4 133 69.2
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 6.3e-52 208.0 130 71.5
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 6.3e-52 208.0 140 68.6
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 8.2e-52 207.6 184 56.5
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.4e-51 206.8 187 55.1
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.4e-51 206.8 191 55.5
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.8e-51 206.5 194 57.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.8e-51 206.5 133 69.9
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.4e-51 206.1 187 55.6
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.1e-51 205.7 187 55.1
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.1e-51 205.3 145 65.5
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.3e-51 204.9 187 54.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.0e-51 204.5 187 53.5
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 9.1e-51 204.1 129 72.9
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 9.1e-51 204.1 176 56.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.6e-50 202.6 187 53.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 4.5e-50 201.8 186 56.5
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 7.7e-50 201.1 148 65.5
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.0e-49 200.7 164 60.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.7e-49 199.9 183 51.9
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.8e-49 198.7 181 54.7
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.5e-49 198.0 228 49.6
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 7.2e-48 194.5 132 67.4
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 7.2e-48 194.5 129 69.8
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.6e-47 193.4 129 69.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 6.1e-47 191.4 131 67.9
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.0e-46 190.7 182 53.8
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.4e-46 190.3 164 58.5
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 2.3e-46 189.5 115 71.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 8.8e-46 187.6 255 43.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.1e-45 187.2 129 66.7
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.6e-45 186.0 128 70.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.8e-44 181.8 158 57.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 8.2e-44 181.0 157 57.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.0e-42 176.4 279 39.8
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 5.5e-40 168.3 116 65.5
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.2e-36 156.4 123 57.7
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 5.3e-35 151.8 124 54.8
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.5e-34 148.7 87 72.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 3.2e-32 142.5 72 90.3
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.2e-32 142.5 92 75.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.2e-32 142.5 125 48.8
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.6e-31 140.2 87 72.4
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.0e-29 133.3 86 68.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.7e-28 129.0 130 53.1
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 6.3e-28 128.3 116 52.6
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 9.1e-27 124.4 79 67.1
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.6e-25 117.9 132 53.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 3.6e-23 112.5 72 65.3
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 4.7e-23 112.1 65 72.3
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 7.5e-21 104.8 138 39.1
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 2.9e-17 92.8 113 37.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.9e-17 92.4 59 66.1
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 5.0e-17 92.0 63 68.3
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 5.4e-11 72.0 90 42.2
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 5.6e-08 62.0 35 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 8.0e-07 58.2 52 48.1


User provided reference genes

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