Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.8e-156 555.8 271 100.0
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.7e-151 539.3 268 96.6
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 5.0e-151 537.7 268 96.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 6.2e-149 530.8 268 95.1
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.9e-146 521.9 268 92.2
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.7e-143 512.7 267 90.6
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 9.9e-139 496.9 292 82.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 6.4e-138 494.2 272 87.9
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 8.7e-135 483.8 271 87.1
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.2e-131 473.4 269 84.0
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.2e-131 473.4 270 84.1
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.2e-131 473.4 270 84.1
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 5.8e-131 471.1 270 83.3
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 9.9e-131 470.3 270 83.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 4.2e-129 464.9 270 82.2
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 5.4e-129 464.5 270 82.6
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 4.0e-124 448.4 264 79.5
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.6e-123 445.7 266 78.6
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.1e-121 440.3 266 77.4
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 7.1e-121 437.6 268 76.1
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 7.1e-121 437.6 272 76.5
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 9.3e-121 437.2 269 77.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.7e-120 435.6 260 77.3
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 3.5e-120 435.3 268 75.4
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 4.6e-120 434.9 268 75.4
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 6.0e-120 434.5 271 76.4
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.0e-119 433.7 264 76.9
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.0e-119 433.7 256 81.6
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.3e-119 433.3 268 75.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 8.7e-119 430.6 261 76.6
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-118 430.3 265 75.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.9e-118 429.5 271 74.2
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.1e-117 426.0 261 75.5
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 2.1e-117 426.0 260 77.3
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 2.1e-117 426.0 253 77.1
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 2.8e-117 425.6 270 75.9
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.7e-117 425.2 265 74.3
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 4.8e-117 424.9 266 75.2
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 6.2e-117 424.5 264 73.5
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.1e-117 424.1 254 78.0
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 8.1e-117 424.1 265 74.7
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-116 423.3 256 77.7
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.4e-116 423.3 264 73.1
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.8e-116 422.9 223 89.7
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 2.4e-116 422.5 256 78.1
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 3.1e-116 422.2 264 73.9
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 3.1e-116 422.2 256 77.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.1e-116 422.2 257 77.0
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 3.1e-116 422.2 261 75.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.0e-116 421.8 254 77.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 4.0e-116 421.8 258 74.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 4.0e-116 421.8 260 75.8
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 6.9e-116 421.0 268 74.6
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.2e-115 420.2 260 75.4
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.5e-115 419.9 256 77.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.0e-115 419.5 265 74.0
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-115 419.5 257 76.7
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.0e-115 419.5 266 72.6
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 4.5e-115 418.3 266 72.9
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 4.5e-115 418.3 266 72.9
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 5.8e-115 417.9 260 74.2
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.8e-115 417.9 266 73.7
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 5.8e-115 417.9 265 73.2
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 7.6e-115 417.5 268 73.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 7.6e-115 417.5 271 72.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.3e-114 416.8 263 72.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.7e-114 416.4 266 74.1
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.7e-114 416.4 265 73.6
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.7e-114 416.4 269 74.3
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.9e-114 415.6 269 74.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.8e-114 415.2 253 75.5
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.8e-114 415.2 260 75.4
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.9e-113 412.9 269 71.4
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.9e-113 412.9 254 75.2
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.4e-113 412.5 265 74.0
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 7.1e-113 411.0 269 71.7
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 9.3e-113 410.6 261 74.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.6e-112 409.8 238 79.0
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.7e-112 409.1 269 71.4
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 3.5e-112 408.7 269 72.5
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.5e-112 408.7 272 71.3
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 7.9e-112 407.5 269 72.9
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 7.9e-112 407.5 266 72.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.8e-111 406.4 247 76.9
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.8e-111 406.4 269 72.5
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 5.1e-111 404.8 262 72.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.1e-110 403.7 239 78.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-110 402.9 283 66.4
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.9e-110 402.9 258 75.6
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.5e-110 402.5 258 74.0
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.6e-110 401.4 266 71.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.6e-110 400.6 281 66.9
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.1e-109 399.4 274 71.5
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 6.2e-109 397.9 260 69.6
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 3.1e-108 395.6 256 72.3
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.5e-107 393.3 279 68.1
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 3.4e-107 392.1 290 65.9
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.7e-106 389.8 259 68.7
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.1e-105 387.1 271 69.0
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 9.3e-105 384.0 264 68.9
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.5e-104 382.1 250 70.8
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.3e-103 380.2 269 67.7
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.3e-103 379.4 221 76.5
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.0e-103 379.0 270 68.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 3.3e-102 375.6 220 78.6
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.6e-101 373.2 269 68.0
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.4e-100 369.4 235 73.2
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 4.5e-99 365.2 260 67.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.0e-98 364.0 240 67.9
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.1e-97 360.5 231 69.7
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.2e-96 357.1 292 62.7
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 4.6e-96 355.1 231 69.3
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 9.7e-94 347.4 228 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 2.2e-93 346.3 227 65.6
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.3e-93 344.7 232 64.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 4.1e-92 342.0 210 74.3
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 9.1e-92 340.9 227 65.2
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 4.5e-91 338.6 235 64.7
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.6e-88 328.9 300 56.0
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-85 319.3 218 69.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 9.1e-84 314.3 261 60.5
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.5e-83 313.5 279 57.7
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 2.6e-83 312.8 193 73.1
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.0e-82 310.8 330 50.6
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 5.0e-82 308.5 231 65.4
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 6.1e-80 301.6 169 81.1
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 6.1e-80 301.6 169 79.3
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.1e-76 288.9 198 65.2
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 7.0e-76 288.1 155 88.4
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.5e-73 279.6 218 54.6
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.0e-63 247.7 162 69.8
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.8e-58 229.2 131 77.9
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.9e-57 226.9 163 67.5
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.8e-56 223.0 196 60.2
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.8e-55 220.3 213 55.4
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.6e-50 201.4 123 78.9
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.1e-40 170.2 122 64.8
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.0e-27 125.6 79 77.2
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.7e-26 124.0 72 80.6
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 4.3e-25 119.4 81 70.4
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.8e-23 114.0 109 55.0
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 1.8e-23 114.0 66 80.3
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.5e-22 110.9 65 72.3
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.8e-21 106.3 66 66.7
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 2.1e-19 100.5 90 56.7
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 5.1e-18 95.9 86 62.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 3.3e-17 93.2 52 76.9
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.3e-17 92.8 61 73.8
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 3.6e-16 89.7 73 60.3
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.8e-14 82.4 55 74.5
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 4.9e-13 79.3 55 72.7
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 4.2e-12 76.3 70 57.1
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.1e-11 73.9 55 65.5
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.0e-10 71.6 74 50.0
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 1.6e-08 64.3 162 31.5
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.1e-08 63.9 67 47.8


User provided reference genes

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