Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 5.3e-37 157.1 78 100.0
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.0e-32 142.9 78 87.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.5e-31 139.0 76 85.5
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.3e-30 136.0 76 84.2
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.7e-30 135.6 78 82.1
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.8e-30 134.8 76 84.2
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.1e-29 132.9 76 84.2
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.1e-29 132.9 76 80.3
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.4e-29 132.5 76 80.3
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.4e-29 132.5 76 82.9
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 2.4e-29 131.7 76 85.5
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.1e-29 131.3 78 78.2
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 4.1e-29 131.0 75 80.0
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 5.4e-29 130.6 76 81.6
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 5.4e-29 130.6 76 77.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 9.1e-29 129.8 76 80.3
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.6e-28 129.0 76 80.3
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.0e-28 128.6 75 81.3
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 3.5e-28 127.9 76 78.9
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 7.7e-28 126.7 78 76.9
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 7.7e-28 126.7 76 75.0
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.0e-27 126.3 78 79.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.7e-27 125.6 77 74.0
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.7e-27 125.6 76 76.3
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.7e-27 125.6 76 77.6
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 2.2e-27 125.2 78 75.6
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.2e-27 125.2 76 76.3
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.9e-27 124.8 76 76.3
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 73.7
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 77.6
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 73.7
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 75.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 75.0
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 75.0
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 5.0e-27 124.0 76 76.3
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 5.0e-27 124.0 78 76.9
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 5.0e-27 124.0 78 76.9
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 5.0e-27 124.0 78 76.9
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 5.0e-27 124.0 78 76.9
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 5.0e-27 124.0 76 73.7
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 78.9
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 75.0
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 76.3
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 80.3
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 8.5e-27 123.2 76 75.0
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 8.5e-27 123.2 76 76.3
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.5e-27 123.2 76 73.7
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.1e-26 122.9 76 76.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 72.4
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 72.4
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 75.0
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 73.7
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.9e-26 122.1 76 76.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 2.5e-26 121.7 71 80.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 2.5e-26 121.7 71 80.3
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.5e-26 121.7 77 77.9
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.2e-26 120.9 76 72.4
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 5.5e-26 120.6 76 75.0
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 5.5e-26 120.6 76 75.0
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 5.5e-26 120.6 76 75.0
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 5.5e-26 120.6 75 72.0
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 7.2e-26 120.2 77 71.4
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 7.2e-26 120.2 75 72.0
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 9.4e-26 119.8 77 71.4
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 9.4e-26 119.8 77 71.4
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 9.4e-26 119.8 77 71.4
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 9.4e-26 119.8 76 73.7
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.4e-26 119.8 76 68.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.4e-26 119.8 77 77.9
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.2e-25 119.4 76 75.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.6e-25 119.0 77 70.1
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.1e-25 118.6 76 73.7
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.1e-25 118.6 76 67.1
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.7e-25 118.2 77 76.6
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 4.7e-25 117.5 76 72.4
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 6.1e-25 117.1 77 68.8
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 6.1e-25 117.1 76 72.4
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 8.0e-25 116.7 76 76.3
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.3e-24 115.2 70 75.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 2.3e-24 115.2 70 75.7
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.3e-24 115.2 75 65.3
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.3e-24 115.2 76 71.1
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.0e-24 114.8 76 72.4
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.0e-24 114.8 76 68.4
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.0e-24 114.8 75 66.7
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 3.0e-24 114.8 76 65.8
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 5.2e-24 114.0 76 67.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 5.2e-24 114.0 63 85.7
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 8.8e-24 113.2 76 72.4
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 76 67.1
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.0e-23 112.1 76 67.1
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.6e-23 111.7 60 86.7
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 98 58.2
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 3.4e-23 111.3 76 67.1
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 5.7e-23 110.5 76 67.1
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 5.7e-23 110.5 75 68.0
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.5e-23 110.2 60 85.0
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 7.5e-23 110.2 76 67.1
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 7.5e-23 110.2 60 85.0
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.8e-23 109.8 83 62.7
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 9.8e-23 109.8 76 63.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 9.8e-23 109.8 73 65.8
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.3e-22 109.4 78 64.1
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.3e-22 109.4 56 91.1
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.7e-22 109.0 76 65.8
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.7e-22 109.0 76 65.8
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 1.7e-22 109.0 62 83.9
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.2e-22 108.6 62 80.6
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 3.7e-22 107.8 75 70.7
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.9e-22 107.5 63 77.8
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 63.2
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 8.3e-22 106.7 72 66.7
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 8.3e-22 106.7 76 63.2
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 2.4e-21 105.1 76 60.5
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 3.1e-21 104.8 76 61.8
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.1e-21 104.4 62 79.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.1e-21 104.4 70 65.7
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.6e-20 102.4 76 60.5
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.7e-20 101.7 64 71.9
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.0e-19 99.8 62 74.2
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.3e-19 99.4 76 63.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.3e-19 99.4 55 80.0
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.3e-19 98.6 76 60.5
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 2.3e-19 98.6 76 55.3
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 2.9e-19 98.2 76 55.3
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.8e-19 97.8 63 71.4
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 5.0e-19 97.4 63 71.4
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 5.0e-19 97.4 54 83.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.1e-18 96.3 57 75.4
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 5.5e-18 94.0 63 61.9
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.2e-17 92.8 76 53.9
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.1e-17 92.0 73 60.3
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.8e-17 91.7 76 52.6
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.6e-17 91.3 76 52.6
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.0e-16 89.7 74 52.7
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.8e-16 89.0 67 55.2
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.2e-15 86.3 69 56.5
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 2.0e-15 85.5 59 59.3
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 5.7e-15 84.0 52 69.2
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 2.4e-13 78.6 59 57.6
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.3e-11 72.0 67 50.7
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 2.9e-11 71.6 73 49.3
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.5e-10 68.6 51 66.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.3e-10 67.0 67 47.8
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.4e-07 58.2 75 37.3


User provided reference genes

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