Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 5.6e-116 421.0 220 100.0
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.0e-110 401.0 220 93.6
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.3e-109 399.1 220 92.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.5e-108 396.4 220 91.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.4e-103 379.0 226 89.4
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 9.3e-103 377.1 226 88.9
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.3e-101 373.2 226 87.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 3.0e-101 372.1 227 87.2
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.1e-101 371.3 226 88.1
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.1e-100 370.2 226 85.8
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.5e-100 369.0 227 85.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.5e-100 369.0 227 85.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 3.6e-99 365.2 227 84.1
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 6.2e-99 364.4 227 84.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 3.1e-98 362.1 228 83.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 9.0e-98 360.5 223 84.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 8.7e-93 344.0 231 78.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.7e-88 329.7 228 76.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 4.0e-82 308.5 219 71.7
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 5.3e-82 308.1 219 71.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.9e-82 307.8 219 70.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.3e-80 303.5 222 69.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.1e-79 297.7 222 68.5
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 9.3e-79 297.4 229 67.7
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.8e-77 293.1 222 67.6
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.8e-77 293.1 226 65.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.1e-77 291.6 226 65.9
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 6.7e-77 291.2 226 65.5
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 9.6e-76 287.3 219 66.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 2.8e-75 285.8 229 64.6
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 3.7e-75 285.4 230 64.3
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.1e-74 283.9 226 65.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.1e-74 283.9 214 68.2
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.1e-74 283.9 218 65.6
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 1.8e-74 283.1 163 87.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.4e-74 282.7 222 65.8
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.4e-74 282.7 221 65.6
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.4e-74 282.7 217 65.4
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 4.1e-74 282.0 225 65.8
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 6.9e-74 281.2 220 65.5
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.5e-73 280.0 221 64.7
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.6e-73 279.3 219 65.3
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.4e-73 278.9 221 66.1
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.7e-72 276.6 220 63.2
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.2e-72 276.2 221 63.8
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.9e-72 275.8 222 63.1
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.8e-72 275.4 221 63.8
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 3.2e-71 272.3 219 63.0
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-71 271.2 219 62.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.2e-70 270.4 220 64.5
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.6e-70 270.0 233 59.2
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 3.6e-70 268.9 220 63.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 4.6e-70 268.5 228 60.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 4.6e-70 268.5 230 60.9
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.6e-70 268.5 235 58.3
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.1e-70 268.1 228 61.0
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 6.1e-70 268.1 217 62.2
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 7.9e-70 267.7 228 61.4
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.9e-70 267.7 242 57.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.0e-69 267.3 214 62.1
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.0e-69 267.3 216 62.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.3e-69 266.9 216 65.3
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.9e-69 265.4 223 59.6
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.7e-69 264.6 227 60.8
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 8.7e-69 264.2 229 59.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 8.7e-69 264.2 227 59.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.1e-68 263.8 227 60.4
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.5e-68 263.5 230 58.3
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.5e-68 262.7 234 56.4
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 9.7e-68 260.8 234 56.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.6e-67 260.0 226 58.0
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.8e-67 258.5 224 61.2
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 6.3e-67 258.1 221 57.9
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 8.2e-67 257.7 221 57.5
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.1e-66 257.3 219 62.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-66 256.9 213 61.0
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.4e-66 256.1 208 61.1
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.4e-66 256.1 226 58.0
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 3.1e-66 255.8 221 59.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 5.3e-66 255.0 213 61.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.2e-65 253.8 223 58.3
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.2e-65 253.8 218 61.5
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 2.6e-65 252.7 234 56.4
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 3.4e-65 252.3 231 53.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 4.5e-65 251.9 185 65.4
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 7.7e-65 251.1 224 57.6
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.0e-64 250.8 210 60.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-64 250.4 212 60.4
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.7e-64 250.0 230 57.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 2.2e-64 249.6 227 58.1
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 3.8e-64 248.8 235 54.0
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.0e-64 248.4 222 58.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 8.5e-64 247.7 222 58.1
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 1.1e-63 247.3 227 58.1
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.9e-63 246.5 221 57.5
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 4.2e-63 245.4 230 56.1
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 5.5e-63 245.0 221 57.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.2e-63 244.6 216 56.5
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 9.4e-63 244.2 215 59.5
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.6e-62 242.3 218 58.7
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 6.1e-62 241.5 222 56.3
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.0e-61 240.7 272 50.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.3e-61 239.6 258 51.6
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 8.8e-61 237.7 222 55.9
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 8.8e-61 237.7 237 53.6
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 8.2e-59 231.1 214 55.1
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.8e-58 229.9 221 56.6
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 9.1e-58 227.6 222 54.1
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.0e-57 226.5 215 53.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 4.5e-57 225.3 228 53.1
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.9e-56 222.6 163 68.1
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.6e-54 215.7 247 47.4
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.9e-54 214.5 244 48.4
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.0e-53 212.6 220 50.9
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 7.4e-52 208.0 222 50.9
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.3e-51 207.2 161 67.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.4e-50 203.0 221 51.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 5.9e-49 198.4 224 50.9
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 7.7e-49 198.0 170 60.0
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.0e-48 197.6 184 62.5
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.3e-48 197.2 162 65.4
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.7e-46 189.5 176 56.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 6.1e-46 188.3 154 64.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 6.1e-46 188.3 141 69.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.4e-45 187.2 169 56.2
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.2e-45 185.3 145 64.8
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 4.4e-44 182.2 214 45.3
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 3.7e-43 179.1 213 50.2
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.9e-40 169.5 224 43.8
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.0e-37 161.0 174 51.1
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.4e-36 155.6 214 43.9
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.8e-35 152.9 220 47.7
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.8e-35 152.1 217 40.1
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.0e-33 146.7 190 43.2
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 7.7e-33 144.8 115 64.3
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.0e-32 144.4 196 41.8
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.7e-32 143.7 116 64.7
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.9e-32 142.9 236 37.7
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 5.0e-32 142.1 115 63.5
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.2e-31 138.3 191 42.9
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 8.0e-30 134.8 126 56.3
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.8e-29 133.7 220 35.5
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.0e-29 132.9 141 51.8
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 7.5e-28 128.3 144 47.2
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 2.8e-27 126.3 221 33.5
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.1e-26 124.4 144 48.6
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-23 114.4 202 42.1
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-23 114.4 202 42.1
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.5e-23 113.2 90 63.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.3e-21 106.7 220 38.6
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.2e-20 104.4 172 44.8
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.4e-20 102.8 98 53.1
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.4e-20 102.4 184 36.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 9.8e-20 101.3 189 40.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 9.8e-20 101.3 53 94.3
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.4e-19 98.6 52 92.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.3e-19 98.2 53 92.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.3e-19 98.2 53 92.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 5.0e-16 89.0 148 37.8
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 8.6e-16 88.2 152 34.2
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.9e-15 87.0 70 58.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 3.3e-15 86.3 58 74.1
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.6e-15 85.5 163 36.8
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 2.1e-14 83.6 79 53.2
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.8e-14 83.2 76 55.3
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 8.0e-14 81.6 75 57.3
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.0e-14 81.6 98 42.9
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.0e-13 81.3 51 78.4
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-13 81.3 54 74.1
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.3e-13 80.1 82 50.0
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.3e-13 80.1 82 50.0
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 2.0e-12 77.0 68 52.9
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.8e-12 74.7 77 46.8
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 2.2e-11 73.6 74 50.0
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 8.3e-11 71.6 79 51.9
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 7.0e-10 68.6 82 42.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.7e-09 66.6 79 48.1
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 8.6e-08 61.6 119 41.2
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.5e-07 60.1 53 54.7
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 4.7e-06 55.8 70 41.4


User provided reference genes

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