Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 2.6e-141 505.4 257 100.0
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 4.5e-133 478.0 257 93.4
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 1.3e-132 476.5 257 94.2
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 2.8e-119 432.2 258 84.5
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.2e-117 426.8 259 85.7
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.2e-117 426.8 259 85.7
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.2e-117 426.8 259 85.7
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 2.7e-114 415.6 256 84.4
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 3.2e-107 392.1 255 80.4
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 9.5e-107 390.6 255 81.2
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 2.7e-106 389.0 255 80.8
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 2.7e-106 389.0 255 80.8
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 3.6e-106 388.7 254 81.1
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 2.3e-105 386.0 255 80.0
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 4.1e-102 375.2 256 76.6
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.8e-97 359.8 265 74.0
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 9.5e-75 284.3 257 58.4
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 3.8e-71 272.3 257 56.0
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.1e-70 270.8 252 57.1
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.4e-70 268.5 234 60.3
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.3e-67 259.2 252 55.6
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 3.3e-67 259.2 252 55.6
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 4.3e-67 258.8 240 59.6
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-66 257.3 249 55.8
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 2.8e-66 256.1 257 55.3
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 2.4e-65 253.1 253 54.5
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.5e-64 250.4 227 59.0
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.0e-64 250.0 252 55.2
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 2.2e-63 246.5 257 51.8
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 2.9e-63 246.1 219 59.4
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 2.9e-63 246.1 219 59.4
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 4.9e-63 245.4 241 52.3
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 2.4e-62 243.0 247 53.0
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 5.4e-62 241.9 218 56.9
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 5.4e-62 241.9 218 59.2
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.6e-61 240.4 253 53.4
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.6e-61 240.4 220 57.3
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 2.1e-61 240.0 228 54.8
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 4.6e-61 238.8 247 55.9
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 3.0e-60 236.1 249 53.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 5.1e-60 235.3 242 54.1
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.5e-59 233.8 237 54.4
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.5e-59 233.8 241 51.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.9e-59 233.4 243 52.7
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 3.3e-59 232.6 253 51.0
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 9.6e-59 231.1 229 52.4
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.3e-58 230.7 233 54.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 1.6e-58 230.3 230 53.5
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 2.1e-58 229.9 244 54.1
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 8.1e-58 228.0 210 58.6
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.4e-57 227.3 241 54.4
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 4.0e-57 225.7 239 51.5
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.3e-57 225.3 223 52.5
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 6.9e-57 224.9 229 50.7
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 8.4e-55 218.0 260 47.3
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 5.4e-54 215.3 277 46.2
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.2e-53 214.2 234 53.0
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 3.0e-52 209.5 232 49.6
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 8.7e-52 208.0 226 52.2
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.6e-50 203.8 157 65.0
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 6.2e-50 201.8 208 52.4
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.4e-49 199.9 208 51.9
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 4.0e-49 199.1 225 48.4
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 2.6e-48 196.4 228 48.2
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 7.6e-48 194.9 255 45.1
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 1.7e-47 193.7 202 53.0
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 3.8e-47 192.6 178 55.6
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 6.4e-47 191.8 202 52.5
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 2.4e-46 189.9 223 48.0
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 7.1e-46 188.3 229 44.5
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.0e-44 184.5 154 61.0
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 1.0e-44 184.5 187 52.4
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 1.0e-44 184.5 187 52.4
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 6.7e-44 181.8 227 42.7
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 6.7e-44 181.8 244 42.6
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.1e-43 181.0 217 46.5
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.3e-42 177.6 200 49.5
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 4.0e-41 172.6 227 42.3
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 5.3e-41 172.2 146 60.3
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 5.3e-41 172.2 279 40.1
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 9.0e-41 171.4 251 43.0
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 2.0e-40 170.2 155 56.8
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 4.5e-40 169.1 228 41.7
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 7.6e-40 168.3 155 56.1
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.3e-39 167.5 144 59.0
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.7e-39 167.2 192 50.0
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 1.7e-39 167.2 139 61.2
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 2.2e-39 166.8 145 57.2
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 6.5e-39 165.2 158 53.8
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 8.4e-39 164.9 168 51.8
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 7.1e-38 161.8 136 58.8
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 7.1e-38 161.8 210 44.3
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 9.3e-38 161.4 143 55.9
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 1.2e-37 161.0 139 56.1
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 1.6e-37 160.6 152 53.3
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 2.1e-37 160.2 141 58.2
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 8.7e-36 154.8 145 55.9
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.5e-35 153.3 142 54.9
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.5e-35 153.3 142 54.9
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.3e-35 152.5 129 58.1
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 9.7e-35 151.4 172 45.9
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 9.7e-35 151.4 150 52.7
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 2.1e-34 150.2 142 53.5
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 4.8e-34 149.1 144 53.5
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.4e-33 147.5 142 55.6
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.8e-33 147.1 150 50.7
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.2e-32 144.4 200 41.0
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.7e-31 140.6 232 36.6
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 2.5e-30 136.7 146 47.3
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 4.2e-30 136.0 175 43.4
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.1e-27 127.9 243 35.0
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 4.1e-25 119.4 90 61.1
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.5e-24 117.5 171 39.2
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 2.7e-21 106.7 78 59.0
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 7.9e-21 105.1 85 60.0
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.7e-18 97.4 78 62.8
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.4e-14 84.3 55 67.3
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.5e-11 74.3 71 46.5
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 3.7e-10 69.7 144 29.9
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 5.3e-09 65.9 74 40.5
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 6.5e-07 58.9 67 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 4.2e-06 56.2 64 39.1


User provided reference genes

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