Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 1.1e-286 989.6 623 100.0
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 3.9e-231 805.1 624 79.0
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 7.6e-219 764.2 622 76.4
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 6.9e-212 741.1 627 75.3
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 1.4e-209 733.4 627 75.3
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 6.7e-207 724.5 627 72.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.2e-200 703.7 616 71.3
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 6.1e-200 701.4 623 72.7
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 5.1e-199 698.4 623 69.8
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 5.7e-198 694.9 630 72.5
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 7.4e-198 694.5 630 72.5
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 7.4e-198 694.5 630 72.2
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 1.7e-170 603.6 638 71.2
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.7e-125 454.1 638 52.4
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 8.1e-120 435.3 644 56.7
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 1.6e-83 314.7 687 39.4
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 3.6e-83 313.5 683 38.9
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 4.1e-79 300.1 685 39.1
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 6.9e-79 299.3 687 38.7
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 1.7e-77 294.7 663 38.3
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.9e-77 293.9 685 39.0
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 2.5e-76 290.8 687 37.7
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 2.5e-76 290.8 677 39.7
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 5.5e-76 289.7 683 39.8
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 2.7e-75 287.3 679 37.1
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 6.7e-74 282.7 689 37.2
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 1.1e-73 282.0 681 36.7
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.3e-72 278.5 671 35.8
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 9.1e-71 272.3 690 37.4
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 2.6e-70 270.8 690 36.8
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 5.9e-70 269.6 674 38.7
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 1.7e-69 268.1 695 36.4
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 2.2e-69 267.7 687 36.7
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 3.8e-69 266.9 687 36.4
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.5e-68 264.2 678 36.6
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 2.5e-68 264.2 675 39.0
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 7.2e-68 262.7 687 36.5
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.1e-67 261.2 696 35.5
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 2.1e-67 261.2 680 36.6
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 4.7e-67 260.0 682 35.9
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 4.7e-67 260.0 689 39.9
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 2.3e-66 257.7 649 37.0
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 2.3e-66 257.7 697 35.4
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.0e-65 254.6 685 36.1
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.7e-65 253.1 681 35.7
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 9.7e-65 252.3 679 35.6
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.7e-64 251.5 685 35.6
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 2.2e-64 251.1 732 34.8
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.7e-64 250.4 681 35.5
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 4.8e-64 250.0 674 35.2
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 8.2e-64 249.2 677 35.3
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.4e-63 248.4 689 34.8
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.8e-63 248.1 674 35.2
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 4.1e-63 246.9 682 36.2
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 5.3e-63 246.5 673 36.6
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 9.1e-63 245.7 671 34.9
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 4.5e-62 243.4 684 35.5
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 5.9e-62 243.0 613 37.4
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 5.9e-62 243.0 684 35.8
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 7.7e-62 242.7 654 37.0
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.1e-60 238.8 681 36.1
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 1.1e-60 238.8 686 34.3
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 2.5e-60 237.7 658 37.5
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 4.2e-60 236.9 677 35.9
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 1.6e-59 235.0 625 35.4
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.0e-58 232.3 683 33.7
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 2.3e-58 231.1 683 34.7
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.5e-57 228.4 682 37.4
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 2.0e-57 228.0 678 35.8
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 1.7e-56 224.9 665 35.3
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 6.3e-56 223.0 723 34.4
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 1.1e-55 222.2 700 34.0
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 4.1e-55 220.3 687 32.9
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 5.4e-55 219.9 682 34.5
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 5.9e-54 216.5 691 37.5
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 7.7e-54 216.1 677 34.0
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.0e-53 215.7 681 38.8
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 1.3e-53 215.3 684 34.5
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 1.7e-53 214.9 656 33.4
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 2.9e-53 214.2 693 32.9
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 3.8e-53 213.8 601 43.6
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 4.2e-52 210.3 690 40.9
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 4.7e-51 206.8 671 35.9
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 6.8e-50 203.0 612 37.1
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 3.7e-48 197.2 680 32.6
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 3.7e-48 197.2 659 32.6
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 2.4e-47 194.5 687 32.0
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 3.1e-47 194.1 668 35.9
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 9.2e-47 192.6 669 34.1
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 3.5e-46 190.7 698 38.1
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 4.5e-46 190.3 703 32.1
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 7.8e-46 189.5 703 36.7
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 5.0e-45 186.8 686 32.2
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 8.6e-45 186.0 669 32.1
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 8.6e-45 186.0 573 34.6
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 4.3e-44 183.7 673 32.5
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 2.1e-43 181.4 646 32.4
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 1.4e-42 178.7 652 32.8
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 2.3e-42 177.9 621 34.6
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 2.6e-41 174.5 350 38.9
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 2.2e-40 171.4 654 34.1
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 2.2e-40 171.4 655 33.9
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 3.7e-40 170.6 650 32.5
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 8.3e-40 169.5 641 31.7
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 2.4e-39 167.9 668 31.3
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 3.2e-39 167.5 431 35.3
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 3.2e-39 167.5 668 32.2
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 3.2e-39 167.5 667 32.1
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 1.0e-37 162.5 662 30.7
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 1.0e-37 162.5 657 30.1
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 1.7e-37 161.8 616 32.3
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 2.3e-37 161.4 704 32.4
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 8.6e-37 159.5 692 29.6
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 8.0e-35 152.9 275 42.5
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 1.4e-34 152.1 672 35.4
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 1.4e-34 152.1 647 32.3
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 4.4e-33 147.1 721 30.4
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 1.0e-29 136.0 683 29.7
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.9e-28 131.7 253 42.3
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 4.0e-26 124.0 584 29.5
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 6.8e-26 123.2 194 41.8
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 6.0e-22 110.2 331 33.2
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 3.3e-20 104.4 195 36.9
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 5.6e-20 103.6 371 33.7
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 2.1e-19 101.7 324 32.7
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.6e-19 100.9 350 34.9
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 3.2e-15 87.8 206 34.5
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 6.6e-13 80.1 171 44.4
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 3.3e-12 77.8 107 53.3
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 9.6e-12 76.3 102 49.0
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.8e-11 74.7 458 27.1
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 7.6e-09 66.6 84 51.2
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 4.9e-08 63.9 100 42.0
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 8.4e-08 63.2 356 28.1
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.9e-07 62.0 442 25.6
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.9e-07 62.0 244 31.1
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 3.2e-07 61.2 247 31.6
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 4.2e-07 60.8 270 27.8
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 7.1e-07 60.1 244 30.7
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 7.1e-07 60.1 266 28.6
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.2e-06 59.3 244 30.7
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.6e-06 58.9 253 28.9
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.5e-06 57.8 96 43.8
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 4.6e-06 57.4 96 43.8
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 4.6e-06 57.4 96 43.8
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 6.0e-06 57.0 256 29.3
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 6.0e-06 57.0 171 31.0


User provided reference genes

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