Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 0.0e+00 1129.0 591 100.0
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 8.6e-297 1023.1 592 90.7
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 4.2e-291 1004.2 588 90.5
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.0e-265 919.8 610 80.8
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.3e-263 912.9 598 81.8
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.8e-254 882.5 605 79.3
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 2.6e-253 878.6 605 79.0
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 7.7e-253 877.1 603 78.8
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.0e-252 876.7 603 78.8
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 2.2e-252 875.5 603 78.8
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.7e-239 832.8 615 74.0
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.7e-231 806.2 624 70.5
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 5.7e-224 781.2 494 83.8
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.2e-206 722.2 595 64.9
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 9.2e-198 694.1 496 70.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 9.2e-198 694.1 496 70.6
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.7e-196 689.9 612 60.8
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 3.9e-196 688.7 569 63.1
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.8e-194 682.6 611 60.7
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 5.2e-193 678.3 539 65.3
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 6.8e-193 677.9 575 61.4
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.5e-192 676.8 501 67.5
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 5.8e-192 674.9 545 65.0
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 5.8e-192 674.9 492 69.1
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 5.8e-192 674.9 638 59.4
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 8.3e-191 671.0 502 68.9
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.1e-190 670.6 606 58.9
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.1e-190 668.7 601 58.9
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.6e-189 666.8 551 64.1
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 3.5e-189 665.6 499 67.7
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 4.6e-189 665.2 608 59.7
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 6.0e-189 664.8 613 59.4
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.0e-188 664.1 551 63.9
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 2.3e-188 662.9 591 60.1
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 3.3e-187 659.1 541 65.2
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.3e-187 659.1 493 67.1
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 4.3e-187 658.7 533 65.5
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 9.5e-187 657.5 515 65.8
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 4.7e-186 655.2 552 62.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 2.6e-184 649.4 497 65.8
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 3.7e-183 645.6 547 61.1
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 3.7e-183 645.6 506 64.6
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 8.4e-183 644.4 551 62.1
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 1.9e-182 643.3 491 66.0
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 4.6e-181 638.6 529 63.7
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.0e-180 637.5 585 57.8
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.3e-180 637.1 514 65.6
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.5e-179 633.6 524 62.6
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 3.3e-179 632.5 493 65.7
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 3.3e-179 632.5 575 59.0
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 4.7e-178 628.6 553 60.9
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.1e-177 627.5 545 60.2
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.4e-177 627.1 561 59.9
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.0e-176 623.2 539 60.9
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.6e-176 622.9 539 60.9
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 4.4e-176 622.1 518 63.1
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 5.8e-176 621.7 589 58.9
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 5.8e-176 621.7 508 63.2
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 5.8e-176 621.7 555 60.7
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 9.9e-176 620.9 519 61.1
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.7e-175 620.2 618 56.6
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.7e-175 620.2 515 63.7
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 1.7e-175 620.2 579 58.2
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 3.8e-175 619.0 539 60.3
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.9e-174 616.7 529 61.2
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 3.2e-174 615.9 522 63.2
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.6e-173 613.6 496 62.3
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 2.1e-173 613.2 579 56.6
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 4.6e-173 612.1 494 64.0
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 7.8e-173 611.3 469 67.0
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.5e-171 607.1 520 61.9
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 2.1e-170 603.2 491 64.0
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.4e-169 600.5 498 62.7
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 2.4e-169 599.7 555 58.6
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 2.6e-168 596.3 545 58.5
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 2.9e-167 592.8 498 62.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 4.9e-167 592.0 469 67.0
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 2.7e-165 586.3 494 60.3
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 3.5e-165 585.9 494 60.9
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.7e-164 583.6 586 53.9
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.9e-164 582.4 552 58.7
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 5.1e-164 582.0 534 56.9
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 7.3e-163 578.2 533 57.2
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.8e-162 576.2 443 66.8
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 1.1e-161 574.3 503 59.4
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 1.1e-161 574.3 491 59.9
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.4e-161 573.9 494 59.3
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.0e-161 572.4 558 57.2
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.4e-160 569.3 499 58.1
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.3e-154 550.8 396 69.7
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 2.8e-154 549.7 621 52.5
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.4e-153 547.4 503 59.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 5.3e-153 545.4 469 63.5
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 4.9e-151 538.9 544 55.3
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 6.7e-148 528.5 496 57.1
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.1e-147 527.7 391 69.6
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 3.7e-146 522.7 344 81.1
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.5e-144 517.3 524 52.1
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 6.1e-141 505.4 383 64.8
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.8e-137 493.8 414 64.0
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 4.2e-134 482.6 513 50.7
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 9.4e-134 481.5 496 54.4
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.5e-131 473.4 545 48.3
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 5.0e-127 459.1 495 52.5
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 6.1e-125 452.2 293 77.5
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.4e-124 451.1 306 75.2
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.7e-122 444.1 488 48.6
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 8.0e-117 425.2 402 55.0
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 7.7e-112 408.7 388 55.2
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 9.4e-110 401.7 567 40.9
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 2.8e-106 390.2 351 57.0
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.2e-102 376.3 341 57.8
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 4.4e-99 366.3 496 41.9
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.8e-97 360.9 194 96.9
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.7e-95 354.4 504 44.2
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 7.3e-94 349.0 289 64.4
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.1e-86 325.1 323 52.9
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 4.3e-86 323.2 328 56.4
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 9.5e-86 322.0 279 58.8
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.0e-84 316.6 293 58.7
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 1.9e-81 307.8 195 77.9
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 7.0e-81 305.8 568 35.4
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 4.3e-78 296.6 258 60.1
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 2.8e-77 293.9 335 51.3
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 2.8e-77 293.9 335 51.3
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.4e-75 286.6 371 47.4
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.8e-68 264.6 192 70.3
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 3.9e-63 246.9 635 29.9
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-62 244.6 299 45.2
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 2.5e-62 244.2 178 69.1
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 1.7e-55 221.5 230 53.9
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 5.1e-55 219.9 155 72.9
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.6e-55 219.5 266 45.1
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 9.6e-54 215.7 264 49.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 4.9e-50 203.4 145 73.8
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.4e-50 202.6 245 46.5
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.2e-49 200.7 246 45.9
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.5e-46 191.0 164 66.5
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 2.0e-43 181.4 157 63.7
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 7.1e-41 172.9 117 75.2
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.6e-38 163.3 245 40.8
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.1e-37 161.4 241 40.2
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.7e-34 151.8 174 46.0
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 1.2e-32 145.6 150 56.0
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 6.0e-32 143.3 162 56.2
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 2.4e-28 131.3 253 36.0
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 9.3e-25 119.4 133 47.4
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 3.3e-22 110.9 103 57.3
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 3.1e-20 104.4 153 43.8
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 1.9e-17 95.1 101 47.5
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-17 93.2 152 37.5
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 6.1e-16 90.1 54 74.1
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 6.7e-15 86.7 45 84.4
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.5e-14 85.5 50 82.0
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 2.0e-14 85.1 74 55.4
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.3e-14 84.3 59 69.5
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 4.4e-14 84.0 59 66.1
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.7e-13 82.0 65 61.5
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.2e-13 81.6 69 60.9
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.8e-13 81.3 122 41.0
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-13 81.3 87 49.4
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.0e-11 75.1 77 42.9
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 1.7e-10 72.0 49 67.3
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 3.8e-10 70.9 52 63.5
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.1e-09 69.3 58 58.6
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 1.4e-09 68.9 54 55.6
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 3.6e-08 64.3 48 66.7
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 6.1e-08 63.5 52 57.7
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 1.4e-07 62.4 51 52.9
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.1e-06 59.3 40 57.5


User provided reference genes

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