Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 4.2e-124 448.0 218 100.0
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.7e-109 399.4 218 91.3
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 2.5e-108 395.6 218 89.9
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 7.5e-97 357.5 221 81.9
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 1.0e-93 347.1 216 80.6
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 2.3e-93 345.9 221 79.6
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 8.1e-91 337.4 218 77.5
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 8.1e-91 337.4 218 77.5
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 4.0e-90 335.1 218 76.6
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 1.7e-88 329.7 208 79.8
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 8.6e-85 317.4 208 76.9
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.2e-83 313.5 208 76.0
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 5.8e-81 304.7 218 74.3
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 9.9e-81 303.9 218 71.6
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 8.9e-74 280.8 230 63.9
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 2.6e-73 279.3 230 63.0
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 4.2e-71 271.9 231 61.0
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 5.4e-71 271.6 221 63.3
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.2e-70 270.4 221 63.3
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 1.6e-70 270.0 230 60.0
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 4.6e-70 268.5 229 62.0
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 6.0e-70 268.1 229 62.0
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 3.0e-69 265.8 181 69.6
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 3.9e-69 265.4 222 64.0
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 6.6e-69 264.6 181 69.1
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.1e-68 263.8 220 61.4
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 1.5e-68 263.5 227 59.0
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 1.9e-68 263.1 229 61.1
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 1.9e-68 263.1 229 60.7
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 1.9e-68 263.1 233 59.2
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 2.5e-68 262.7 228 62.3
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 4.3e-68 261.9 219 62.6
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 5.6e-68 261.5 219 62.1
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 7.3e-68 261.2 222 64.4
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 7.3e-68 261.2 224 59.8
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 9.6e-68 260.8 200 63.0
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 1.3e-67 260.4 231 59.7
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 3.6e-67 258.8 221 63.3
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 1.1e-66 257.3 177 69.5
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 1.1e-66 257.3 187 67.4
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.1e-66 257.3 222 59.0
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 1.4e-66 256.9 225 60.0
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 1.4e-66 256.9 181 66.3
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 1.4e-66 256.9 223 61.0
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 2.4e-66 256.1 226 61.5
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 2.4e-66 256.1 227 60.8
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 4.0e-66 255.4 230 61.7
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.0e-66 255.4 165 72.7
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.0e-66 255.4 165 72.7
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 4.0e-66 255.4 224 61.6
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 5.3e-66 255.0 216 63.4
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 1.2e-65 253.8 177 66.1
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.2e-65 253.8 201 61.7
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 1.5e-65 253.4 221 59.3
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 2.0e-65 253.1 199 64.8
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 2.0e-65 253.1 222 60.8
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.6e-65 252.7 180 67.2
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 3.4e-65 252.3 214 58.4
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 3.4e-65 252.3 183 65.0
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 4.5e-65 251.9 226 62.4
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 5.8e-65 251.5 182 64.8
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.3e-64 250.4 230 59.1
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.7e-64 250.0 178 67.4
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.2e-64 249.6 243 55.1
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.9e-64 248.4 219 63.5
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 6.4e-64 248.1 218 60.6
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 8.4e-64 247.7 166 67.5
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.1e-63 247.3 203 62.6
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 1.1e-63 247.3 179 66.5
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.1e-63 247.3 222 59.5
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 1.9e-63 246.5 232 57.3
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.2e-63 245.7 189 64.0
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 3.2e-63 245.7 217 61.3
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 4.2e-63 245.4 202 61.9
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 4.2e-63 245.4 216 59.7
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.7e-62 242.7 224 56.7
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 2.7e-62 242.7 176 67.6
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.5e-62 242.3 212 57.5
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.0e-61 240.7 202 58.9
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 3.9e-61 238.8 214 59.8
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 3.9e-61 238.8 175 66.3
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 5.1e-61 238.4 170 66.5
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 6.7e-61 238.0 216 59.3
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 1.1e-60 237.3 199 63.8
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.5e-60 236.9 174 66.1
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 1.9e-60 236.5 209 56.9
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.3e-60 235.7 212 57.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 9.6e-60 234.2 145 77.9
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 1.8e-58 229.9 160 65.6
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 4.0e-58 228.8 152 68.4
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 7.6e-57 224.6 188 60.1
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 1.7e-56 223.4 174 64.9
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 3.8e-56 222.2 208 57.2
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 8.4e-56 221.1 175 60.6
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.4e-55 219.5 189 57.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.2e-55 218.8 185 58.9
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 5.5e-55 218.4 176 63.1
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.6e-54 216.9 185 60.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 5.1e-53 211.8 155 64.5
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 9.6e-52 207.6 124 76.6
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 2.8e-51 206.1 151 61.6
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.5e-49 200.3 198 52.5
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 4.9e-48 195.3 149 60.4
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 7.1e-47 191.4 172 58.7
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.6e-43 180.3 140 66.4
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 6.3e-43 178.3 157 49.7
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 7.6e-41 171.4 165 56.4
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 4.2e-39 165.6 111 63.1
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 5.5e-39 165.2 92 88.0
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 1.8e-34 150.2 137 52.6
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.4e-34 149.8 157 45.9
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.0e-33 146.7 156 55.1
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.0e-33 146.7 156 55.1
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.4e-31 140.6 141 56.7
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 2.5e-31 139.8 128 47.7
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 3.2e-31 139.4 94 73.4
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 1.4e-29 134.0 141 51.1
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 8.2e-27 124.8 80 73.8
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 5.3e-26 122.1 140 47.9
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 2.2e-24 116.7 126 50.0
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.1e-23 114.4 143 46.2
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.3e-19 100.9 142 37.3
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 3.1e-10 69.7 174 29.3
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 2.5e-07 60.1 42 64.3
Cre03.g208049 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D139805 5.5e-07 58.9 77 37.7


User provided reference genes

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