Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1007 Capsella rubella HOM05D007751 ORTHO05D009813 6.2e-89 330.9 179 100.0
AL8G24070 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.5e-74 283.1 176 86.9
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 2.8e-57 225.7 179 68.7
Thhalv10015309m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 2.8e-49 199.1 177 65.5
Sp6g11910 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.8e-48 196.4 179 61.5
A04p13370 Brassica napus HOM05D007751 ORTHO05D009813 6.9e-48 194.5 179 62.6
C04p47120 Brassica napus HOM05D007751 ORTHO05D009813 2.0e-47 193.0 179 62.0
BolC4t26306H Brassica oleracea HOM05D007751 ORTHO05D009813 3.4e-47 192.2 179 61.5
BraA04t16992Z Brassica rapa HOM05D007751 ORTHO05D009813 5.9e-47 191.4 179 61.5
C03p16960 Brassica napus HOM05D007751 ORTHO05D009813 7.7e-47 191.0 173 60.7
BcaC01g04833 Brassica carinata HOM05D007751 ORTHO05D009813 2.2e-46 189.5 176 58.5
BraA03t10746Z Brassica rapa HOM05D007751 ORTHO05D009813 2.9e-46 189.1 173 59.5
C03p33340 Brassica napus HOM05D007751 ORTHO05D009813 8.5e-46 187.6 176 58.0
CARHR258610 Cardamine hirsuta HOM05D007751 ORTHO05D009813 1.1e-45 187.2 179 60.3
Carub.0008s1001 Capsella rubella HOM05D007751 ORTHO05D009813 3.2e-45 185.7 178 56.2
BcaB01g04307 Brassica carinata HOM05D007751 ORTHO05D009813 4.2e-45 185.3 173 58.4
BcaC01g06316 Brassica carinata HOM05D007751 ORTHO05D009813 4.2e-45 185.3 173 58.4
BolC3t14109H Brassica oleracea HOM05D007751 ORTHO05D009813 4.2e-45 185.3 173 58.4
A03p14510 Brassica napus HOM05D007751 ORTHO05D009813 9.4e-45 184.1 173 58.4
Carub.0008s0995 Capsella rubella HOM05D007751 ORTHO05D009813 7.9e-44 181.0 181 59.1
AL8G24060 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.8e-43 179.9 184 57.1
AL8G24040 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 2.3e-43 179.5 183 59.6
Carub.0008s0998 Capsella rubella HOM05D007751 ORTHO05D009813 8.8e-43 177.6 181 57.5
AT5G50040 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 2.0e-42 176.4 179 59.8
Carub.0008s1000 Capsella rubella HOM05D007751 ORTHO05D009813 2.0e-42 176.4 180 57.2
Sp6g11880 Schrenkiella parvula HOM05D007751 ORTHO05D009813 2.5e-42 176.0 176 56.8
Aa31sc47G40 Aethionema arabicum HOM05D007751 ORTHO05D009813 3.3e-42 175.6 174 56.3
CARHR257930 Cardamine hirsuta HOM05D007751 ORTHO05D009813 5.7e-42 174.9 176 56.8
AL8G24050 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 7.4e-42 174.5 167 55.7
AT5G50070 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 6.3e-41 171.4 184 54.9
CARHR284460 Cardamine hirsuta HOM05D007751 ORTHO05D009813 8.2e-41 171.0 182 52.7
Carub.0008s0997 Capsella rubella HOM05D007751 ORTHO05D009813 1.4e-40 170.2 179 54.2
Carub.0002s0822 Capsella rubella HOM05D007751 ORTHO05D009813 6.9e-40 167.9 181 54.1
Carub.0008s0996 Capsella rubella HOM05D007751 ORTHO05D009813 6.9e-40 167.9 181 54.1
CARHR258630 Cardamine hirsuta HOM05D007751 ORTHO05D009813 9.1e-40 167.5 176 53.4
A10p08560 Brassica napus HOM05D007751 ORTHO05D009813 2.6e-39 166.0 175 52.6
AT5G50060 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 4.5e-39 165.2 167 52.7
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 4.5e-39 165.2 175 52.6
Carub.0008s1002 Capsella rubella HOM05D007751 ORTHO05D009813 4.5e-39 165.2 184 55.4
Thhalv10014776m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 3.8e-38 162.2 176 52.3
AT1G54980 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 6.5e-38 161.4 174 52.3
AT5G50030 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 8.5e-38 161.0 175 52.0
AL8G24030 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 5.5e-37 158.3 176 51.1
Carub.0008s0999 Capsella rubella HOM05D007751 ORTHO05D009813 1.2e-36 157.1 173 52.0
Aa31sc47G80 Aethionema arabicum HOM05D007751 ORTHO05D009813 4.7e-36 155.2 154 55.8
Sp6g11860 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.1e-34 150.6 176 49.4
AL1G65530 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 6.3e-33 144.8 141 53.9
Carub.0002s0821 Capsella rubella HOM05D007751 ORTHO05D009813 6.3e-33 144.8 175 49.7
BolC9t56709H Brassica oleracea HOM05D007751 ORTHO05D009813 3.1e-32 142.5 163 50.3
Carub.0008s0994 Capsella rubella HOM05D007751 ORTHO05D009813 1.2e-31 140.6 176 49.4
AT5G50050 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.0e-30 137.5 176 47.2
BraA02t06621Z Brassica rapa HOM05D007751 ORTHO05D009813 1.9e-29 133.3 177 45.8
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 4.2e-29 132.1 178 42.7
Aa31sc47G50 Aethionema arabicum HOM05D007751 ORTHO05D009813 7.2e-29 131.3 182 42.9
AL7G28560 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 3.6e-28 129.0 176 42.6
AT4G24640 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 6.1e-28 128.3 176 43.2
Carub.0007s1642 Capsella rubella HOM05D007751 ORTHO05D009813 1.0e-27 127.5 176 42.6
Thhalv10026329m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 1.0e-27 127.5 176 43.2
C02p25780 Brassica napus HOM05D007751 ORTHO05D009813 2.3e-27 126.3 177 44.1
CARHR232030 Cardamine hirsuta HOM05D007751 ORTHO05D009813 5.2e-27 125.2 176 40.3
CARHR258620 Cardamine hirsuta HOM05D007751 ORTHO05D009813 8.8e-27 124.4 179 44.1
Sp7g22630 Schrenkiella parvula HOM05D007751 ORTHO05D009813 2.2e-25 119.8 176 39.8
Carub.0008s1005 Capsella rubella HOM05D007751 ORTHO05D009813 3.7e-25 119.0 185 43.2
BraA01t01929Z Brassica rapa HOM05D007751 ORTHO05D009813 1.4e-24 117.1 182 40.7
Carub.0008s1006 Capsella rubella HOM05D007751 ORTHO05D009813 1.8e-24 116.7 185 42.7
A01p20050 Brassica napus HOM05D007751 ORTHO05D009813 2.4e-24 116.3 182 40.7
C09p38520 Brassica napus HOM05D007751 ORTHO05D009813 3.1e-24 115.9 132 50.8
BolC2t08679H Brassica oleracea HOM05D007751 ORTHO05D009813 7.0e-24 114.8 182 40.7
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 7.0e-24 114.8 176 38.6
BolC2t08647H Brassica oleracea HOM05D007751 ORTHO05D009813 9.1e-24 114.4 151 44.4
A02p15670 Brassica napus HOM05D007751 ORTHO05D009813 1.6e-23 113.6 182 40.7
BraA02t06629Z Brassica rapa HOM05D007751 ORTHO05D009813 1.6e-23 113.6 182 40.7
C02p26100 Brassica napus HOM05D007751 ORTHO05D009813 2.6e-23 112.8 182 40.1
Carub.0002s0820 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-22 110.2 179 38.5
BcaNung04957 Brassica carinata HOM05D007751 ORTHO05D009813 2.9e-22 109.4 176 39.8
BolC1t01925H Brassica oleracea HOM05D007751 ORTHO05D009813 2.1e-20 103.2 176 39.2
BcaC09g50845 Brassica carinata HOM05D007751 ORTHO05D009813 3.6e-20 102.4 176 38.6
C01p19970 Brassica napus HOM05D007751 ORTHO05D009813 4.7e-20 102.1 176 39.2
BraA01t01533Z Brassica rapa HOM05D007751 ORTHO05D009813 1.0e-19 100.9 176 38.6
BcaC03g15060 Brassica carinata HOM05D007751 ORTHO05D009813 6.8e-19 98.2 136 41.9
A01p15990 Brassica napus HOM05D007751 ORTHO05D009813 8.8e-19 97.8 176 38.1
Aa31LG4G9710 Aethionema arabicum HOM05D007751 ORTHO05D009813 5.9e-15 85.1 112 42.0
A02p15600 Brassica napus HOM05D007751 ORTHO05D009813 1.3e-14 84.0 126 40.5
BcaB01g02924 Brassica carinata HOM05D007751 ORTHO05D009813 8.5e-14 81.3 59 62.7
Carub.0008s1003 Capsella rubella HOM05D007751 ORTHO05D009813 2.5e-13 79.7 192 34.9
BcaC07g38163 Brassica carinata HOM05D007751 ORTHO05D009813 8.0e-12 74.7 107 41.1
Carub.0008s1004 Capsella rubella HOM05D007751 ORTHO05D009813 8.0e-12 74.7 145 35.9
BolC4t26309H Brassica oleracea HOM05D007751 ORTHO05D009813 6.8e-11 71.6 77 57.1
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 1.7e-09 67.0 122 36.9
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 2.2e-09 66.6 131 34.4
BolC8t48582H Brassica oleracea HOM05D007751 ORTHO05D009813 8.3e-09 64.7 103 39.8
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 2.0e-07 60.1 137 26.3
Gohir.1Z049488 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.5e-07 59.3 111 28.8
Gohir.A05G245251 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.5e-07 59.3 111 28.8
Gorai.009G256900 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.5e-07 58.9 108 31.5
Gorai.009G257000 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.5e-07 58.9 108 31.5
Gorai.009G257100 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.5e-07 58.9 108 31.5
Gorai.N024500 Gossypium raimondii HOM05D007679 ORTHO05D009560 4.5e-07 58.9 108 31.5
Cpa.g.sc49.92 Carica papaya HOM05D007679 ORTHO05D009560 5.9e-07 58.5 141 31.2
Gohir.A13G213100 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.9e-07 58.5 110 30.0
Gohir.A13G213133 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.9e-07 58.5 110 30.0
Gohir.A13G213166 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.9e-07 58.5 110 30.0
Gohir.A13G213199 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.9e-07 58.5 110 30.0
Gohir.A13G213232 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.9e-07 58.5 110 30.0
Gorai.009G256800 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.9e-07 58.5 108 31.5
Gorai.009G257300 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.9e-07 58.5 108 31.5
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 7.7e-07 58.2 183 30.1
Gohir.D05G246025 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.7e-07 58.2 179 27.9
Gohir.D05G246600 Gossypium hirsutum HOM05D007679 ORTHO05D009560 7.7e-07 58.2 136 30.9
Gorai.009G256100 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.7e-07 58.2 111 29.7
Gorai.009G256400 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.7e-07 58.2 110 30.0
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 7.7e-07 58.2 139 33.8
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 1.0e-06 57.8 139 33.1
Gohir.D05G246800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.3e-06 57.4 136 30.9
Gohir.D05G245700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.7e-06 57.0 136 28.7
Gorai.009G256000 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-06 57.0 110 30.0
Gorai.009G257500 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.7e-06 57.0 108 30.6
Gohir.A05G245318 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.9e-06 56.2 135 29.6
Gohir.D05G245800 Gossypium hirsutum HOM05D007679 ORTHO05D009560 3.8e-06 55.8 152 25.7
Gorai.009G255800 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.8e-06 55.8 110 30.0
Gorai.009G256700 Gossypium raimondii HOM05D007679 ORTHO05D009560 3.8e-06 55.8 134 29.1
Gohir.A05G244700 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.0e-06 55.5 140 27.9
Gorai.009G257600 Gossypium raimondii HOM05D007679 ORTHO05D009560 5.0e-06 55.5 133 28.6
Gohir.A13G213265 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.6e-06 55.1 110 28.2
Gohir.D05G246400 Gossypium hirsutum HOM05D007679 ORTHO05D009560 8.6e-06 54.7 157 28.7


User provided reference genes

Program Settings