Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1001 Capsella rubella HOM05D007751 ORTHO05D009813 3.2e-96 355.1 185 100.0
AL8G24050 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 2.4e-75 285.8 167 86.2
AT5G50060 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.2e-71 273.5 167 81.4
CARHR258620 Cardamine hirsuta HOM05D007751 ORTHO05D009813 5.9e-50 201.4 178 61.8
Carub.0008s1007 Capsella rubella HOM05D007751 ORTHO05D009813 2.1e-47 193.0 178 56.2
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 1.0e-41 174.1 177 53.1
Thhalv10014776m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 2.2e-41 172.9 175 50.9
A10p08560 Brassica napus HOM05D007751 ORTHO05D009813 2.9e-41 172.6 177 52.5
Sp6g11910 Schrenkiella parvula HOM05D007751 ORTHO05D009813 2.9e-41 172.6 180 53.3
AT5G50030 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.8e-41 172.2 174 52.3
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.9e-40 169.9 178 50.0
AL8G24070 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 3.2e-40 169.1 175 52.6
CARHR258630 Cardamine hirsuta HOM05D007751 ORTHO05D009813 3.2e-40 169.1 177 51.4
AL8G24030 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 2.7e-39 166.0 175 50.3
Thhalv10015309m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 2.7e-39 166.0 180 50.6
Aa31sc47G40 Aethionema arabicum HOM05D007751 ORTHO05D009813 7.9e-39 164.5 174 50.0
Sp6g11860 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.4e-38 163.7 175 50.9
AT5G50040 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.0e-38 162.5 180 51.1
AL8G24060 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 3.9e-38 162.2 183 49.7
Carub.0002s0822 Capsella rubella HOM05D007751 ORTHO05D009813 6.7e-38 161.4 179 49.2
Carub.0008s0995 Capsella rubella HOM05D007751 ORTHO05D009813 1.1e-37 160.6 180 49.4
AL8G24040 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.5e-37 160.2 182 50.0
Carub.0008s0996 Capsella rubella HOM05D007751 ORTHO05D009813 2.6e-37 159.5 182 49.5
AT5G50070 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 5.7e-37 158.3 183 50.8
Carub.0008s1000 Capsella rubella HOM05D007751 ORTHO05D009813 9.7e-37 157.5 179 49.7
C03p16960 Brassica napus HOM05D007751 ORTHO05D009813 3.7e-36 155.6 174 48.9
CARHR257930 Cardamine hirsuta HOM05D007751 ORTHO05D009813 4.8e-36 155.2 176 49.4
BcaC01g04833 Brassica carinata HOM05D007751 ORTHO05D009813 8.2e-36 154.5 177 49.2
BraA03t10746Z Brassica rapa HOM05D007751 ORTHO05D009813 1.1e-35 154.1 174 48.3
A04p13370 Brassica napus HOM05D007751 ORTHO05D009813 5.3e-35 151.8 180 46.1
C03p33340 Brassica napus HOM05D007751 ORTHO05D009813 6.9e-35 151.4 177 48.0
BraA04t16992Z Brassica rapa HOM05D007751 ORTHO05D009813 6.9e-35 151.4 180 45.6
CARHR258610 Cardamine hirsuta HOM05D007751 ORTHO05D009813 6.9e-35 151.4 177 48.0
BcaB01g04307 Brassica carinata HOM05D007751 ORTHO05D009813 1.2e-34 150.6 174 47.7
BcaC01g06316 Brassica carinata HOM05D007751 ORTHO05D009813 1.2e-34 150.6 174 47.7
BolC3t14109H Brassica oleracea HOM05D007751 ORTHO05D009813 1.2e-34 150.6 174 47.7
Aa31sc47G80 Aethionema arabicum HOM05D007751 ORTHO05D009813 2.0e-34 149.8 158 45.6
C04p47120 Brassica napus HOM05D007751 ORTHO05D009813 2.0e-34 149.8 180 45.6
Sp6g11880 Schrenkiella parvula HOM05D007751 ORTHO05D009813 2.0e-34 149.8 175 46.3
BolC4t26306H Brassica oleracea HOM05D007751 ORTHO05D009813 3.4e-34 149.1 180 45.0
Carub.0008s1002 Capsella rubella HOM05D007751 ORTHO05D009813 3.4e-34 149.1 183 49.2
A03p14510 Brassica napus HOM05D007751 ORTHO05D009813 4.5e-34 148.7 174 47.1
AT1G54980 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.3e-33 147.1 172 48.8
CARHR284460 Cardamine hirsuta HOM05D007751 ORTHO05D009813 1.3e-33 147.1 181 44.2
Carub.0008s0994 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-33 146.7 175 46.3
BolC9t56709H Brassica oleracea HOM05D007751 ORTHO05D009813 2.2e-33 146.4 166 50.6
Carub.0008s0998 Capsella rubella HOM05D007751 ORTHO05D009813 3.8e-33 145.6 182 46.2
Carub.0008s0997 Capsella rubella HOM05D007751 ORTHO05D009813 6.1e-31 138.3 178 44.4
Aa31sc47G50 Aethionema arabicum HOM05D007751 ORTHO05D009813 1.1e-29 134.0 181 40.3
AT5G50050 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 5.7e-29 131.7 172 45.3
Carub.0008s0999 Capsella rubella HOM05D007751 ORTHO05D009813 7.4e-29 131.3 176 43.8
Carub.0002s0821 Capsella rubella HOM05D007751 ORTHO05D009813 3.7e-28 129.0 177 46.9
Thhalv10026329m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 1.8e-27 126.7 177 41.8
AT4G24640 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 4.1e-27 125.6 177 41.2
Carub.0007s1642 Capsella rubella HOM05D007751 ORTHO05D009813 4.1e-27 125.6 177 40.7
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 7.0e-27 124.8 177 39.0
AL7G28560 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 9.1e-27 124.4 177 40.7
AL1G65530 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 4.5e-26 122.1 141 47.5
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 1.5e-24 117.1 144 41.7
C09p38520 Brassica napus HOM05D007751 ORTHO05D009813 1.9e-24 116.7 121 52.1
CARHR232030 Cardamine hirsuta HOM05D007751 ORTHO05D009813 3.2e-24 115.9 177 37.9
BraA02t06621Z Brassica rapa HOM05D007751 ORTHO05D009813 9.4e-24 114.4 176 41.5
Sp7g22630 Schrenkiella parvula HOM05D007751 ORTHO05D009813 3.6e-23 112.5 177 37.3
Carub.0008s1006 Capsella rubella HOM05D007751 ORTHO05D009813 1.0e-22 110.9 182 40.7
Carub.0008s1005 Capsella rubella HOM05D007751 ORTHO05D009813 1.8e-22 110.2 182 39.0
C02p25780 Brassica napus HOM05D007751 ORTHO05D009813 4.0e-22 109.0 176 40.3
Carub.0002s0820 Capsella rubella HOM05D007751 ORTHO05D009813 5.2e-22 108.6 177 35.6
A01p20050 Brassica napus HOM05D007751 ORTHO05D009813 8.8e-22 107.8 181 38.1
BcaNung04957 Brassica carinata HOM05D007751 ORTHO05D009813 1.2e-21 107.5 177 36.2
C01p19970 Brassica napus HOM05D007751 ORTHO05D009813 1.5e-21 107.1 177 37.9
BolC1t01925H Brassica oleracea HOM05D007751 ORTHO05D009813 2.0e-21 106.7 177 37.9
BraA01t01929Z Brassica rapa HOM05D007751 ORTHO05D009813 2.0e-21 106.7 181 37.6
BcaC09g50845 Brassica carinata HOM05D007751 ORTHO05D009813 3.3e-21 105.9 177 37.3
BraA01t01533Z Brassica rapa HOM05D007751 ORTHO05D009813 3.3e-21 105.9 177 37.3
BolC2t08679H Brassica oleracea HOM05D007751 ORTHO05D009813 9.7e-21 104.4 181 37.6
A02p15670 Brassica napus HOM05D007751 ORTHO05D009813 1.3e-20 104.0 181 37.6
BraA02t06629Z Brassica rapa HOM05D007751 ORTHO05D009813 1.3e-20 104.0 181 37.6
A01p15990 Brassica napus HOM05D007751 ORTHO05D009813 2.8e-20 102.8 177 36.7
C02p26100 Brassica napus HOM05D007751 ORTHO05D009813 6.3e-20 101.7 181 37.0
BolC2t08647H Brassica oleracea HOM05D007751 ORTHO05D009813 3.1e-19 99.4 151 39.7
Aa31LG4G9710 Aethionema arabicum HOM05D007751 ORTHO05D009813 1.0e-17 94.4 112 42.0
BcaC03g15060 Brassica carinata HOM05D007751 ORTHO05D009813 3.8e-17 92.4 136 39.0
BcaC07g38163 Brassica carinata HOM05D007751 ORTHO05D009813 1.6e-15 87.0 105 44.8
A08p21410 Brassica napus HOM05D007751 ORTHO05D009813 1.0e-14 84.3 111 40.5
Carub.0008s1004 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-12 77.0 136 35.3
BolC8t48582H Brassica oleracea HOM05D007751 ORTHO05D009813 2.2e-12 76.6 108 41.7
Carub.0008s1003 Capsella rubella HOM05D007751 ORTHO05D009813 4.8e-12 75.5 184 34.2
A02p15600 Brassica napus HOM05D007751 ORTHO05D009813 1.8e-11 73.6 125 38.4
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 2.3e-09 66.6 109 30.3
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 3.8e-09 65.9 109 30.3
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 5.0e-09 65.5 112 31.2
BcaB01g02924 Brassica carinata HOM05D007751 ORTHO05D009813 1.9e-08 63.5 59 47.5
Manes.02G182301 Manihot esculenta HOM05D004894 ORTHO05D005689 5.5e-08 62.0 120 33.3
Lalb_Chr03g0035551 Lupinus albus HOM05D004894 ORTHO05D005689 1.2e-07 60.8 134 30.6
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 3.6e-07 59.3 95 33.7
BolC4t26309H Brassica oleracea HOM05D007751 ORTHO05D009813 1.0e-06 57.8 80 46.2
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 2.3e-06 56.6 95 31.6
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 2.3e-06 56.6 121 29.8
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 2.3e-06 56.6 143 25.9
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 5.2e-06 55.5 111 28.8
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 5.2e-06 55.5 146 29.5
CSS0042410 Camellia sinensis var. sinensis HOM05D007679 ORTHO05D009560 6.8e-06 55.1 95 30.5


User provided reference genes

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