Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0994 Capsella rubella HOM05D007751 ORTHO05D009813 4.2e-96 354.8 186 100.0
AL8G24030 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 5.8e-82 307.8 188 86.2
AT5G50030 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.4e-80 303.1 188 84.0
Sp6g11860 Schrenkiella parvula HOM05D007751 ORTHO05D009813 6.2e-76 287.7 188 79.3
Thhalv10014776m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 1.1e-75 287.0 188 80.3
CARHR258630 Cardamine hirsuta HOM05D007751 ORTHO05D009813 6.7e-70 267.7 188 76.1
A10p08560 Brassica napus HOM05D007751 ORTHO05D009813 1.1e-67 260.4 189 74.1
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 2.4e-67 259.2 189 73.5
Aa31sc47G40 Aethionema arabicum HOM05D007751 ORTHO05D009813 1.9e-56 223.0 182 66.5
Thhalv10026329m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 1.2e-50 203.8 185 57.8
BolC9t56709H Brassica oleracea HOM05D007751 ORTHO05D009813 1.3e-49 200.3 161 69.6
AL7G28560 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 7.2e-48 194.5 188 56.4
AT4G24640 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.2e-47 193.7 188 56.4
BcaNung04957 Brassica carinata HOM05D007751 ORTHO05D009813 1.0e-46 190.7 188 55.3
Carub.0007s1642 Capsella rubella HOM05D007751 ORTHO05D009813 3.0e-46 189.1 188 54.8
Sp7g22630 Schrenkiella parvula HOM05D007751 ORTHO05D009813 3.9e-46 188.7 179 56.4
CARHR232030 Cardamine hirsuta HOM05D007751 ORTHO05D009813 4.8e-44 181.8 188 51.6
C09p38520 Brassica napus HOM05D007751 ORTHO05D009813 1.1e-43 180.6 177 59.9
A01p15990 Brassica napus HOM05D007751 ORTHO05D009813 1.8e-43 179.9 188 53.2
BraA01t01533Z Brassica rapa HOM05D007751 ORTHO05D009813 1.8e-43 179.9 188 53.2
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 2.4e-43 179.5 190 54.7
C01p19970 Brassica napus HOM05D007751 ORTHO05D009813 3.1e-43 179.1 188 52.7
BolC1t01925H Brassica oleracea HOM05D007751 ORTHO05D009813 5.3e-43 178.3 188 53.2
BcaC09g50845 Brassica carinata HOM05D007751 ORTHO05D009813 7.0e-43 177.9 188 52.1
Sp6g11910 Schrenkiella parvula HOM05D007751 ORTHO05D009813 3.2e-40 169.1 174 55.7
CARHR257930 Cardamine hirsuta HOM05D007751 ORTHO05D009813 4.7e-39 165.2 174 55.7
AT5G50040 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 8.0e-39 164.5 174 56.3
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 2.0e-37 159.8 185 49.2
BraA04t16992Z Brassica rapa HOM05D007751 ORTHO05D009813 5.7e-37 158.3 174 51.7
Carub.0008s0995 Capsella rubella HOM05D007751 ORTHO05D009813 1.3e-36 157.1 176 54.5
C04p47120 Brassica napus HOM05D007751 ORTHO05D009813 2.2e-36 156.4 174 51.7
A04p13370 Brassica napus HOM05D007751 ORTHO05D009813 2.8e-36 156.0 174 51.1
BolC4t26306H Brassica oleracea HOM05D007751 ORTHO05D009813 3.7e-36 155.6 174 51.1
AL8G24060 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.8e-35 153.3 181 50.3
BcaC07g38163 Brassica carinata HOM05D007751 ORTHO05D009813 7.0e-35 151.4 119 65.5
Thhalv10015309m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 2.7e-34 149.4 172 50.6
Aa31sc47G80 Aethionema arabicum HOM05D007751 ORTHO05D009813 3.5e-34 149.1 155 49.7
AL8G24070 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 3.5e-34 149.1 185 48.1
AL8G24040 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 4.5e-34 148.7 178 52.8
CARHR258610 Cardamine hirsuta HOM05D007751 ORTHO05D009813 1.0e-33 147.5 174 50.6
AT5G50070 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.7e-33 146.7 181 48.1
Carub.0008s1007 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-33 146.7 176 49.4
Carub.0008s0996 Capsella rubella HOM05D007751 ORTHO05D009813 2.2e-33 146.4 176 50.6
Aa31LG4G9710 Aethionema arabicum HOM05D007751 ORTHO05D009813 5.0e-33 145.2 124 60.5
Carub.0008s1001 Capsella rubella HOM05D007751 ORTHO05D009813 5.0e-33 145.2 175 46.3
BolC8t48582H Brassica oleracea HOM05D007751 ORTHO05D009813 9.4e-32 141.0 122 62.3
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.2e-31 140.6 176 44.9
AL8G24050 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.6e-31 140.2 164 48.8
Carub.0008s1000 Capsella rubella HOM05D007751 ORTHO05D009813 2.1e-31 139.8 175 48.0
Carub.0008s1002 Capsella rubella HOM05D007751 ORTHO05D009813 2.1e-31 139.8 181 47.5
A08p21410 Brassica napus HOM05D007751 ORTHO05D009813 3.6e-31 139.0 135 57.8
BcaB01g04307 Brassica carinata HOM05D007751 ORTHO05D009813 4.7e-31 138.7 172 46.5
BcaC01g06316 Brassica carinata HOM05D007751 ORTHO05D009813 4.7e-31 138.7 172 46.5
BolC3t14109H Brassica oleracea HOM05D007751 ORTHO05D009813 4.7e-31 138.7 172 46.5
Sp6g11880 Schrenkiella parvula HOM05D007751 ORTHO05D009813 4.7e-31 138.7 174 46.0
Carub.0002s0822 Capsella rubella HOM05D007751 ORTHO05D009813 8.0e-31 137.9 179 46.9
A03p14510 Brassica napus HOM05D007751 ORTHO05D009813 1.8e-30 136.7 172 45.9
BraA03t10746Z Brassica rapa HOM05D007751 ORTHO05D009813 1.8e-30 136.7 172 46.5
BcaC01g04833 Brassica carinata HOM05D007751 ORTHO05D009813 3.0e-30 136.0 174 44.3
C03p33340 Brassica napus HOM05D007751 ORTHO05D009813 3.0e-30 136.0 174 43.7
AT1G54980 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.2e-29 134.0 167 47.9
C03p16960 Brassica napus HOM05D007751 ORTHO05D009813 2.6e-29 132.9 172 45.3
AT5G50060 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 9.8e-29 131.0 164 44.5
CARHR284460 Cardamine hirsuta HOM05D007751 ORTHO05D009813 2.2e-28 129.8 176 43.2
Carub.0008s0999 Capsella rubella HOM05D007751 ORTHO05D009813 3.7e-28 129.0 171 45.6
Carub.0008s0997 Capsella rubella HOM05D007751 ORTHO05D009813 2.4e-27 126.3 173 44.5
AL1G65530 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.3e-25 120.6 138 50.7
Carub.0008s0998 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-25 120.2 176 44.9
Aa31sc47G50 Aethionema arabicum HOM05D007751 ORTHO05D009813 3.8e-25 119.0 179 39.7
BraA02t06621Z Brassica rapa HOM05D007751 ORTHO05D009813 3.8e-25 119.0 181 43.1
C02p25780 Brassica napus HOM05D007751 ORTHO05D009813 1.1e-24 117.5 181 43.1
AT5G50050 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.3e-24 115.9 175 44.0
Carub.0002s0821 Capsella rubella HOM05D007751 ORTHO05D009813 1.2e-23 114.0 178 43.3
Carub.0008s1006 Capsella rubella HOM05D007751 ORTHO05D009813 2.8e-23 112.8 182 41.8
CARHR258620 Cardamine hirsuta HOM05D007751 ORTHO05D009813 2.6e-21 106.3 176 40.3
BolC2t08647H Brassica oleracea HOM05D007751 ORTHO05D009813 1.3e-20 104.0 155 41.3
Carub.0008s1005 Capsella rubella HOM05D007751 ORTHO05D009813 3.7e-20 102.4 182 39.6
BolC2t08679H Brassica oleracea HOM05D007751 ORTHO05D009813 1.6e-18 97.1 186 36.0
A01p20050 Brassica napus HOM05D007751 ORTHO05D009813 5.9e-18 95.1 186 35.5
A02p15670 Brassica napus HOM05D007751 ORTHO05D009813 7.8e-18 94.7 186 36.0
BraA01t01929Z Brassica rapa HOM05D007751 ORTHO05D009813 7.8e-18 94.7 186 35.5
BraA02t06629Z Brassica rapa HOM05D007751 ORTHO05D009813 7.8e-18 94.7 186 36.0
C02p26100 Brassica napus HOM05D007751 ORTHO05D009813 2.9e-17 92.8 186 34.9
BcaC03g15060 Brassica carinata HOM05D007751 ORTHO05D009813 4.3e-16 89.0 160 35.6
Carub.0008s1003 Capsella rubella HOM05D007751 ORTHO05D009813 2.2e-12 76.6 184 33.7
Carub.0002s0820 Capsella rubella HOM05D007751 ORTHO05D009813 3.7e-12 75.9 108 38.0
A02p15600 Brassica napus HOM05D007751 ORTHO05D009813 1.4e-11 73.9 126 40.5
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 1.4e-11 73.9 134 35.8
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 7.8e-10 68.2 119 35.3
BolC4t26309H Brassica oleracea HOM05D007751 ORTHO05D009813 1.3e-09 67.4 75 52.0
Carub.0008s1004 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-09 67.0 140 35.7
BcaB01g02924 Brassica carinata HOM05D007751 ORTHO05D009813 4.7e-07 58.9 60 50.0
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 6.2e-07 58.5 140 30.7
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 8.0e-07 58.2 144 34.0


User provided reference genes

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