Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0991 Capsella rubella HOM05D001755 ORTHO05D001665 7.7e-24 112.8 52 100.0
Solyc12g087895.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.6e-16 88.6 53 81.1
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 2.7e-16 87.8 53 79.2
SEGI_04003 Sequoiadendron giganteum HOM05D001755 ORTHO05D001665 2.7e-16 87.8 53 83.0
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 3.5e-16 87.4 53 79.2
Psat2g065840 Pisum sativum HOM05D001755 ORTHO05D001665 4.5e-16 87.0 54 77.8
HanXRQChr05g0163291 Helianthus annuus HOM05D001755 ORTHO05D001665 5.9e-16 86.7 54 79.6
HanXRQChr05g0163551 Helianthus annuus HOM05D001755 ORTHO05D001665 5.9e-16 86.7 54 79.6
Hma1.2p1_0010F.1_g007000 Hydrangea macrophylla HOM05D001755 ORTHO05D001665 5.9e-16 86.7 53 77.4
vmacro04680 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 5.9e-16 86.7 54 79.6
Migut.B00565 Erythranthe guttata HOM05D001755 ORTHO05D001665 1.0e-15 85.9 54 75.9
Gohir.A05G265200 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.3e-15 85.5 54 79.6
Sc26g0000250 Simmondsia chinensis HOM05D001755 ORTHO05D001665 1.3e-15 85.5 54 77.8
Glyma.14G180100 Glycine max HOM05D001755 ORTHO05D001665 1.7e-15 85.1 54 77.8
Nn5g29940 Nelumbo nucifera HOM05D001755 ORTHO05D001665 1.7e-15 85.1 54 77.8
Nitab4.5_0002025g0030 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.7e-15 85.1 51 80.4
Nitab4.5_0004381g0040 Nicotiana tabacum HOM05D001755 ORTHO05D001665 1.7e-15 85.1 51 80.4
TAR381G0451 Trochodendron aralioides HOM05D001755 ORTHO05D001665 1.7e-15 85.1 54 77.8
CiPaw.05G031100 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.2e-15 84.7 54 77.8
Dinv44836 Davidia involucrata HOM05D001755 ORTHO05D001665 2.2e-15 84.7 53 77.4
Lalb_Chr04g0252981 Lupinus albus HOM05D001755 ORTHO05D001665 2.2e-15 84.7 54 74.1
MBI02_g18287_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 2.2e-15 84.7 53 77.4
MD04G1047500 Malus domestica HOM05D001755 ORTHO05D001665 2.2e-15 84.7 54 75.9
MD15G1381800 Malus domestica HOM05D001755 ORTHO05D001665 2.2e-15 84.7 54 77.8
Nitab4.5_0011953g0010 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.2e-15 84.7 53 77.4
Sed0014860 Sechium edule HOM05D001755 ORTHO05D001665 2.2e-15 84.7 54 77.8
CiPaw.07G168100 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 75.9
CiPaw.08G054200 Carya illinoinensis HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 75.9
ClCG00G003730 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 77.8
ClCG08G011500 Citrullus lanatus HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 77.8
Dinv15987 Davidia involucrata HOM05D001755 ORTHO05D001665 2.9e-15 84.3 53 77.4
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 75.9
Prupe.8G067700 Prunus persica HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 77.8
Sed0017446 Sechium edule HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 79.6
vmacro21312 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 2.9e-15 84.3 54 77.8
arahy.Tifrunner.gnm1.ann1.IVYM6W Arachis hypogaea HOM05D001755 ORTHO05D001665 3.8e-15 84.0 54 75.9
CiPaw.06G156900 Carya illinoinensis HOM05D001755 ORTHO05D001665 3.8e-15 84.0 54 77.8
Sabra07G0092200 Salix brachista HOM05D001755 ORTHO05D001665 3.8e-15 84.0 53 75.5
CSS0010978 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 5.0e-15 83.6 53 77.4
CSS0046975 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 5.0e-15 83.6 53 77.4
Duzib132G0573 Durio zibethinus HOM05D001755 ORTHO05D001665 6.5e-15 83.2 54 75.9
Gohir.A03G175950 Gossypium hirsutum HOM05D001755 ORTHO05D001665 6.5e-15 83.2 54 75.9
Gohir.D02G199750 Gossypium hirsutum HOM05D001755 ORTHO05D001665 6.5e-15 83.2 54 75.9
Gohir.D05G267450 Gossypium hirsutum HOM05D001755 ORTHO05D001665 6.5e-15 83.2 54 77.8
Gorai.005G224400 Gossypium raimondii HOM05D001755 ORTHO05D001665 6.5e-15 83.2 54 75.9
Rhsim05G0102500 Rhododendron simsii HOM05D001755 ORTHO05D001665 6.5e-15 83.2 53 77.4
ATR0022G040 Amborella trichopoda HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
CAN.G1658.7 Capsicum annuum HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Dinv24160 Davidia involucrata HOM05D001755 ORTHO05D001665 8.5e-15 82.8 53 77.4
FAN08G0378 Fragaria x ananassa HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Gorai.010G035900 Gossypium raimondii HOM05D001755 ORTHO05D001665 8.5e-15 82.8 53 77.4
MD08G1193000 Malus domestica HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Phvul.006G203500 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Potri.002G103400 Populus trichocarpa HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Potri.005G158000 Populus trichocarpa HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Prupe.1G527700 Prunus persica HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
RcHm_v2.0_Chr7g0237501 Rosa chinensis HOM05D001755 ORTHO05D001665 8.5e-15 82.8 54 75.9
Glyma.02G212300 Glycine max HOM05D001755 ORTHO05D001665 1.1e-14 82.4 54 75.9
Hund16874 Selenicereus undatus HOM05D001755 ORTHO05D001665 1.1e-14 82.4 53 73.6
Solyc04g076033.1 Solanum lycopersicum HOM05D001755 ORTHO05D001665 1.1e-14 82.4 53 75.5
TPR.G18441 Trifolium pratense HOM05D001755 ORTHO05D001665 1.1e-14 82.4 54 75.9
Glyma.04G093000 Glycine max HOM05D001755 ORTHO05D001665 1.5e-14 82.0 54 74.1
Gohir.A05G221300 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.5e-14 82.0 53 77.4
Gohir.D05G224000 Gossypium hirsutum HOM05D001755 ORTHO05D001665 1.5e-14 82.0 53 77.4
Gorai.009G231400 Gossypium raimondii HOM05D001755 ORTHO05D001665 1.5e-14 82.0 53 77.4
LjContig00408g0004832 Lotus japonicus HOM05D001755 ORTHO05D001665 1.5e-14 82.0 54 77.8
Oeu022087.1 Olea europaea HOM05D001755 ORTHO05D001665 1.5e-14 82.0 54 75.9
Oeu049223.1 Olea europaea HOM05D001755 ORTHO05D001665 1.5e-14 82.0 54 74.1
Phvul.009G038300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 1.5e-14 82.0 54 74.1
EL10Ac9g22086 Beta vulgaris HOM05D001755 ORTHO05D001665 1.9e-14 81.6 53 71.7
ClCG09G015900 Citrullus lanatus HOM05D001755 ORTHO05D001665 1.9e-14 81.6 54 74.1
ClCG10G009540 Citrullus lanatus HOM05D001755 ORTHO05D001665 1.9e-14 81.6 53 75.5
CsaV3_7G007020 Cucumis sativus L. HOM05D001755 ORTHO05D001665 1.9e-14 81.6 54 74.1
DCAR_029187 Daucus carota HOM05D001755 ORTHO05D001665 1.9e-14 81.6 52 71.2
Manes.07G036900 Manihot esculenta HOM05D001755 ORTHO05D001665 1.9e-14 81.6 54 75.9
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 1.9e-14 81.6 53 75.5
Migut.L01932 Erythranthe guttata HOM05D001755 ORTHO05D001665 2.5e-14 81.3 54 74.1
Manes.10G102000 Manihot esculenta HOM05D001755 ORTHO05D001665 2.5e-14 81.3 54 74.1
Manes.18G061200 Manihot esculenta HOM05D001755 ORTHO05D001665 2.5e-14 81.3 54 74.1
Medtr5g065670 Medicago truncatula HOM05D001755 ORTHO05D001665 2.5e-14 81.3 53 73.6
Sed0003373 Sechium edule HOM05D001755 ORTHO05D001665 2.5e-14 81.3 54 75.9
arahy.Tifrunner.gnm1.ann1.KFP2BM Arachis hypogaea HOM05D001755 ORTHO05D001665 3.2e-14 80.9 53 75.5
arahy.Tifrunner.gnm1.ann1.NI9N2T Arachis hypogaea HOM05D001755 ORTHO05D001665 3.2e-14 80.9 53 75.5
Manes.02G146800 Manihot esculenta HOM05D001755 ORTHO05D001665 3.2e-14 80.9 54 74.1
Phvul.008G179600 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 3.2e-14 80.9 54 74.1
Thecc.02G132000 Theobroma cacao HOM05D001755 ORTHO05D001665 3.2e-14 80.9 54 74.1
Ciclev10006528m.g Citrus clementina HOM05D001755 ORTHO05D001665 4.2e-14 80.5 54 70.4
Glyma.15G056700 Glycine max HOM05D001755 ORTHO05D001665 5.5e-14 80.1 54 74.1
Carub.0006s0803 Capsella rubella HOM05D001755 ORTHO05D001665 7.2e-14 79.7 55 72.7
CARHR203920 Cardamine hirsuta HOM05D001755 ORTHO05D001665 7.2e-14 79.7 55 72.7
Thhalv10015558m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 7.2e-14 79.7 55 72.7
Lalb_Chr11g0065111 Lupinus albus HOM05D001755 ORTHO05D001665 7.2e-14 79.7 54 72.2
Potri.017G047932 Populus trichocarpa HOM05D001755 ORTHO05D001665 7.2e-14 79.7 54 72.2
SGA_v2.0_scaffold219G42570 Striga asiatica HOM05D001755 ORTHO05D001665 7.2e-14 79.7 54 74.1
Lj1g0001104 Lotus japonicus HOM05D001755 ORTHO05D001665 9.4e-14 79.3 54 70.4
Lalb_Chr17g0344421 Lupinus albus HOM05D001755 ORTHO05D001665 9.4e-14 79.3 50 76.0
vmacro19953 Vaccinium macrocarpon HOM05D001755 ORTHO05D001665 9.4e-14 79.3 51 76.5
Actinidia33109 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.2e-13 79.0 51 76.5
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 1.2e-13 79.0 53 71.7
Lalb_Chr05g0217661 Lupinus albus HOM05D001755 ORTHO05D001665 1.2e-13 79.0 54 72.2
Lalb_Chr08g0242371 Lupinus albus HOM05D001755 ORTHO05D001665 1.2e-13 79.0 54 70.4
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 1.2e-13 79.0 51 74.5
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.6e-13 78.6 51 74.5
Dinv42637 Davidia involucrata HOM05D001755 ORTHO05D001665 1.6e-13 78.6 51 74.5
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 2.1e-13 78.2 54 72.2
Lj4g0016585 Lotus japonicus HOM05D001755 ORTHO05D001665 2.1e-13 78.2 54 70.4
Sed0017055 Sechium edule HOM05D001755 ORTHO05D001665 2.1e-13 78.2 54 72.2
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 2.7e-13 77.8 54 72.2
arahy.Tifrunner.gnm1.ann1.KCV3PX Arachis hypogaea HOM05D001755 ORTHO05D001665 2.7e-13 77.8 54 74.1
arahy.Tifrunner.gnm1.ann1.ZL8253 Arachis hypogaea HOM05D001755 ORTHO05D001665 3.6e-13 77.4 53 73.6
Glyma.07G181100 Glycine max HOM05D001755 ORTHO05D001665 3.6e-13 77.4 54 72.2
Glyma.08G069600 Glycine max HOM05D001755 ORTHO05D001665 3.6e-13 77.4 54 72.2
Phvul.002G211300 Phaseolus vulgaris HOM05D001755 ORTHO05D001665 3.6e-13 77.4 54 72.2
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 3.6e-13 77.4 53 69.8
Aa31LG1G17560 Aethionema arabicum HOM05D001755 ORTHO05D001665 8.0e-13 76.3 53 71.7
BcaC03g18258 Brassica carinata HOM05D001755 ORTHO05D001665 8.0e-13 76.3 54 72.2
Solyc01g105700.3 Solanum lycopersicum HOM05D001755 ORTHO05D001665 8.0e-13 76.3 54 68.5
BraA02t09253Z Brassica rapa HOM05D001755 ORTHO05D001665 1.0e-12 75.9 54 70.4
SGA_v2.0_scaffold14G07146 Striga asiatica HOM05D001755 ORTHO05D001665 1.0e-12 75.9 53 69.8
BcaB08g37202 Brassica carinata HOM05D001755 ORTHO05D001665 1.4e-12 75.5 51 68.6
BolC9t59551H Brassica oleracea HOM05D001755 ORTHO05D001665 1.4e-12 75.5 51 68.6
CSS0016051 Camellia sinensis var. sinensis HOM05D001755 ORTHO05D001665 1.4e-12 75.5 66 63.6
Glyma.06G094800 Glycine max HOM05D001755 ORTHO05D001665 1.4e-12 75.5 57 68.4
Thhalv10005432m.g Eutrema salsugineum HOM05D001755 ORTHO05D001665 4.0e-12 73.9 54 70.4
BraA10t44831Z Brassica rapa HOM05D001755 ORTHO05D001665 5.2e-12 73.6 54 64.8
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 5.2e-12 73.6 53 67.9
Oeu060039.1 Olea europaea HOM05D001755 ORTHO05D001665 8.8e-12 72.8 51 68.6
Carub.0008s2514 Capsella rubella HOM05D001755 ORTHO05D001665 2.0e-11 71.6 54 64.8
Aa31sc34G40 Aethionema arabicum HOM05D001755 ORTHO05D001665 2.6e-11 71.2 47 74.5
Nitab4.5_0001507g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 2.6e-11 71.2 46 73.9
Actinidia25389 Actinidia chinensis HOM05D001755 ORTHO05D001665 4.4e-11 70.5 45 75.6
CARHR278280 Cardamine hirsuta HOM05D001755 ORTHO05D001665 5.7e-11 70.1 54 64.8
BcaC01g06905 Brassica carinata HOM05D001755 ORTHO05D001665 7.5e-11 69.7 51 68.6
C03p61950 Brassica napus HOM05D001755 ORTHO05D001665 7.5e-11 69.7 51 68.6
BolC3t18454H Brassica oleracea HOM05D001755 ORTHO05D001665 7.5e-11 69.7 51 68.6
Sabra05G0120800 Salix brachista HOM05D001755 ORTHO05D001665 1.3e-10 68.9 76 52.6
Nitab4.5_0001264g0230 Nicotiana tabacum HOM05D001755 ORTHO05D001665 8.3e-10 66.2 92 46.7
MBI06_g42716_MAGBIO Magnolia biondii HOM05D001755 ORTHO05D001665 5.4e-09 63.5 42 73.8
TAR628G0605 Trochodendron aralioides HOM05D001755 ORTHO05D001665 2.0e-08 61.6 41 73.2
Rhsim06G0074100 Rhododendron simsii HOM05D001755 ORTHO05D001665 3.5e-08 60.8 41 73.2
Aqoxy6G01463 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 5.9e-08 60.1 41 73.2
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 7.7e-08 59.7 41 73.2
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 7.7e-08 59.7 41 73.2
Nitab4.5_0002650g0060 Nicotiana tabacum HOM05D001755 ORTHO05D001665 7.7e-08 59.7 41 73.2
VMungo1309G0268 Vigna mungo HOM05D001755 ORTHO05D001665 7.7e-08 59.7 41 70.7
FAN13G1260 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.0e-07 59.3 41 70.7
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 1.3e-07 58.9 41 73.2
AUR62019010 Chenopodium quinoa HOM05D001755 ORTHO05D001665 2.2e-07 58.2 41 68.3
MELO3C018591.2 Cucumis melo HOM05D001755 ORTHO05D001665 2.2e-07 58.2 41 68.3
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 2.9e-07 57.8 43 62.8
VMungo0540G1031 Vigna mungo HOM05D001755 ORTHO05D001665 3.8e-07 57.4 41 68.3
Ciclev10003720m.g Citrus clementina HOM05D001755 ORTHO05D001665 6.5e-07 56.6 41 68.3
arahy.Tifrunner.gnm1.ann1.0E4ZKW Arachis hypogaea HOM05D001755 ORTHO05D001665 1.9e-06 55.1 41 63.4
arahy.Tifrunner.gnm1.ann1.FV0XI2 Arachis hypogaea HOM05D001755 ORTHO05D001665 1.9e-06 55.1 41 63.4
FAN18G3889 Fragaria x ananassa HOM05D001755 ORTHO05D001665 1.9e-06 55.1 40 65.0
VMungo0251G2544 Vigna mungo HOM05D001755 ORTHO05D001665 4.2e-06 53.9 41 65.9
Sabra17G0032400 Salix brachista HOM05D001755 ORTHO05D001665 5.5e-06 53.5 41 61.0
Nn3g20651 Nelumbo nucifera HOM05D004468 ORTHO05D011136 9.5e-06 52.8 43 62.8


User provided reference genes

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