Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 0.0e+00 1319.7 726 100.0
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 0.0e+00 1194.5 727 89.1
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 0.0e+00 1181.4 727 88.6
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 0.0e+00 1126.3 726 84.4
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 0.0e+00 1124.0 726 84.0
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 0.0e+00 1114.4 726 83.5
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 0.0e+00 1091.6 726 82.1
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 0.0e+00 1085.9 729 82.6
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 5.0e-312 1073.5 729 81.8
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 1.1e-304 1049.7 727 80.1
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 1.3e-302 1042.7 729 80.0
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 1.3e-302 1042.7 729 80.0
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 3.4e-287 991.5 728 75.3
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 7.9e-284 980.3 727 76.8
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 1.2e-252 876.7 724 65.7
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 8.0e-252 874.0 724 64.9
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.8e-251 872.8 724 65.5
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 1.5e-250 869.8 724 66.0
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 2.0e-250 869.4 729 66.1
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 2.2e-249 865.9 724 65.3
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 5.2e-243 844.7 696 65.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 1.5e-242 843.2 725 64.3
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 4.4e-242 841.6 724 64.1
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 3.7e-241 838.6 727 63.4
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 4.8e-241 838.2 724 64.5
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 8.5e-238 827.4 811 58.7
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 2.5e-237 825.9 725 63.3
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 5.5e-237 824.7 724 62.4
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.8e-235 819.7 724 63.0
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 6.8e-235 817.8 753 60.7
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 3.4e-234 815.5 724 63.0
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 9.8e-234 813.9 734 63.5
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 4.9e-233 811.6 727 62.9
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 1.8e-232 809.7 727 62.2
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 7.0e-232 807.7 730 62.5
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 9.2e-232 807.4 724 63.0
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.7e-231 805.8 727 62.3
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 5.9e-231 804.7 724 60.6
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 7.7e-231 804.3 727 61.9
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 6.6e-230 801.2 725 61.9
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 6.6e-230 801.2 730 62.3
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.1e-229 800.4 752 61.7
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 2.5e-229 799.3 725 60.7
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 9.5e-229 797.3 728 62.0
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 4.0e-227 792.0 724 61.2
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 1.2e-226 790.4 728 62.0
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 4.4e-226 788.5 729 60.4
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 5.7e-226 788.1 724 60.4
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 5.7e-226 788.1 727 61.9
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 3.7e-225 785.4 730 59.7
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.8e-224 783.1 724 60.5
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 1.8e-224 783.1 725 60.3
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 1.8e-224 783.1 669 65.9
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 3.5e-223 778.9 725 60.3
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 3.5e-223 778.9 730 60.5
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 4.6e-223 778.5 727 61.2
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 3.0e-222 775.8 725 60.3
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 5.0e-222 775.0 707 61.2
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.5e-221 773.5 726 60.3
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 1.5e-221 773.5 726 61.4
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.0e-219 767.3 724 59.5
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 2.6e-218 762.7 726 59.1
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.4e-216 755.0 724 58.3
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 3.5e-215 752.3 725 58.5
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 4.6e-215 751.9 715 58.9
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 5.6e-213 745.0 728 57.6
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 2.8e-212 742.7 731 57.6
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 6.2e-212 741.5 736 56.9
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 1.8e-211 740.0 703 59.2
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.3e-211 739.6 726 57.9
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 9.8e-210 734.2 814 54.2
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 2.2e-209 733.0 700 58.9
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 6.4e-209 731.5 796 55.4
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 1.1e-205 720.7 698 59.0
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.7e-201 705.7 746 55.8
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 3.0e-198 696.0 726 56.9
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 5.1e-198 695.3 727 57.2
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 6.8e-195 684.9 726 55.4
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.0e-194 683.3 729 56.2
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 7.6e-194 681.4 724 54.4
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 2.9e-193 679.5 699 55.5
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 9.3e-192 674.5 664 58.9
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 3.3e-189 666.0 670 56.0
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.6e-188 663.7 726 53.9
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.4e-187 660.6 699 54.1
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 4.0e-187 659.1 776 51.7
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 1.6e-172 610.5 735 49.4
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 5.7e-165 585.5 734 48.2
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 2.1e-164 583.6 672 51.8
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.3e-158 564.3 726 47.9
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 3.7e-156 556.2 594 55.6
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.7e-140 504.2 575 52.2
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 8.2e-132 475.3 357 71.1
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 1.0e-129 468.4 427 62.3
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 6.5e-129 465.7 556 50.9
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 2.2e-121 440.7 428 59.6
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 6.1e-119 432.6 361 65.4
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 2.6e-117 427.2 588 47.6
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.6e-113 412.5 299 71.9
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 9.2e-99 365.5 378 56.3
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 2.0e-98 364.4 265 71.7
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 8.9e-86 322.4 701 33.5
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 2.3e-81 307.8 728 32.3
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 4.3e-80 303.5 371 52.0
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.4e-78 297.7 348 54.9
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.0e-77 294.7 505 41.4
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 2.9e-76 290.8 448 43.8
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 4.6e-74 283.5 664 30.1
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 2.8e-71 274.2 272 57.0
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 3.5e-66 257.3 706 29.6
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 2.2e-60 238.0 695 28.1
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 7.4e-56 223.0 429 40.6
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.3e-25 121.7 82 68.3
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 7.4e-24 116.7 136 48.5
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 7.4e-24 116.7 110 55.5
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.2e-23 113.2 125 48.0
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 5.3e-22 110.5 202 41.1
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 1.3e-20 105.9 512 23.4
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 5.5e-19 100.5 182 40.1
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 4.0e-17 94.4 99 54.5
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.8e-15 87.4 137 40.9
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.1e-14 86.3 165 35.2
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 1.4e-14 85.9 106 48.1
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.8e-14 85.5 55 80.0
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 1.2e-13 82.8 115 40.0
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 2.9e-12 78.2 70 54.3
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.5e-11 75.9 93 46.2
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.9e-11 75.5 55 69.1
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 4.2e-11 74.3 56 66.1
PSO017G4247 Papaver somniferum HOM05D006009 ORTHO05D007389 4.1e-06 57.8 117 38.5


User provided reference genes

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