Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 2110.9 1070 100.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 2032.7 1071 95.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 2030.0 1072 95.3
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1997.6 1070 93.5
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1991.5 1070 93.4
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1981.8 1070 92.8
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1959.9 1070 92.0
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1942.5 1070 91.5
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1942.5 1070 91.5
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1941.0 1070 91.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1939.9 1070 91.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1938.7 1070 91.3
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1876.7 1104 85.9
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1816.2 1085 83.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1786.2 1063 83.9
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1691.8 1075 76.8
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1080 74.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1618.6 1079 74.2
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1614.0 1087 74.0
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1079 74.1
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1607.4 1089 73.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1076 74.3
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1077 74.1
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1090 73.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1083 73.1
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1601.3 1086 73.5
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1081 73.7
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1598.9 1081 73.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1081 73.5
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1082 73.6
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1076 73.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1594.3 1087 72.8
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1087 72.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1089 72.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1074 73.0
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1068 73.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1586.2 1074 73.4
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1582.0 1083 72.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1086 72.1
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1085 73.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1074 72.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1104 71.2
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1576.6 1089 72.2
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1074 73.3
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1077 72.5
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1573.1 1078 72.4
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1083 71.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1567.7 1083 71.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1083 71.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1085 72.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1562.7 1084 71.5
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1082 71.9
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1087 71.6
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1553.1 1077 71.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1551.6 1084 70.7
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1550.4 1079 70.4
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1079 70.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1079 70.4
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1086 70.7
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1085 70.4
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1099 69.2
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1085 70.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1546.6 1092 71.3
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1545.8 1087 70.3
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1545.8 1083 70.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1087 70.1
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1085 70.1
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1081 70.9
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1085 69.6
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1536.2 1074 71.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1073 70.3
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1169 66.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1527.3 1088 71.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1086 70.5
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1525.4 1075 71.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1523.5 1169 66.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1105 69.2
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 1078 71.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1518.8 1075 71.3
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1075 70.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1075 70.9
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1511.5 1081 69.8
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1506.5 1090 69.2
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1503.4 1081 69.5
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1088 68.2
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1087 69.2
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1490.3 1076 69.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1486.9 1143 65.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1486.1 1072 68.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1484.9 1076 69.1
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1077 67.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1484.2 1010 73.3
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1481.5 1076 69.1
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1481.1 1081 68.6
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1479.9 1076 67.7
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1476.8 1077 68.5
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1471.1 993 73.2
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1469.1 1085 68.3
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1459.1 1072 66.7
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1457.6 1098 66.1
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1451.0 1048 68.2
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1431.4 1082 66.3
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1427.9 1101 66.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1419.4 995 71.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1419.1 1095 64.7
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1412.5 981 71.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1396.7 1077 64.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1385.9 1075 66.4
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1366.3 1078 65.0
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1355.9 1096 62.0
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1294.3 1076 63.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1244.6 788 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1150.6 1085 53.5
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1146.7 717 79.4
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1143.3 1075 53.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 671 83.0
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 689 80.7
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1122.8 1117 51.4
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1122.5 1077 52.5
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1115.9 1078 52.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.3e-287 993.4 751 66.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.6e-277 958.7 831 57.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.9e-265 919.8 812 59.1
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.9e-265 919.8 609 73.9
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.3e-244 848.6 944 47.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.1e-241 840.9 628 68.8
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 5.5e-233 812.0 499 78.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 5.9e-211 738.8 635 60.6
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 7.7e-195 685.3 973 43.7
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 6.0e-163 579.3 601 52.9
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.6e-160 571.2 429 67.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.3e-145 520.4 303 80.2
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.7e-128 463.8 312 71.2
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 3.8e-109 400.6 383 55.1
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 7.5e-65 253.4 289 48.4
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.9e-62 243.8 205 60.0
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.0e-61 243.0 136 78.7
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 5.0e-61 240.7 244 54.5
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 3.5e-46 191.4 138 63.8
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.6e-36 156.8 241 41.5
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 2.1e-30 139.0 133 53.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 4.6e-30 137.9 156 48.1
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.0e-29 135.2 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 3.4e-25 121.7 108 55.6
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.4e-24 117.1 97 60.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.1e-20 106.7 88 58.0
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.3e-12 78.6 49 65.3
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 2.1e-11 75.9 45 80.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.2e-09 70.1 76 43.4
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 7.6e-09 67.4 126 36.5
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.0e-08 67.0 33 90.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 7.1e-07 60.8 38 71.1


User provided reference genes

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