Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 0.0e+00 1451.8 723 100.0
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 0.0e+00 1318.5 723 90.7
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 0.0e+00 1295.0 723 89.3
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 0.0e+00 1249.6 724 85.5
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 0.0e+00 1217.2 734 83.2
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 0.0e+00 1198.3 734 81.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 0.0e+00 1197.2 734 80.9
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 0.0e+00 1196.8 731 82.5
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 0.0e+00 1164.8 732 79.9
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 0.0e+00 1140.2 708 79.7
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 0.0e+00 1117.8 707 78.5
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 0.0e+00 1112.4 730 75.6
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.5e-282 976.1 724 64.9
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 9.6e-282 973.4 725 65.2
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.3e-281 973.0 719 65.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.8e-281 971.8 719 65.5
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.2e-281 970.7 719 65.5
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.1e-280 969.9 735 65.3
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.9e-280 967.2 719 65.2
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 2.6e-279 965.3 733 65.5
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 9.9e-279 963.4 722 65.4
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 1.1e-277 959.9 734 64.3
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.4e-277 959.5 721 64.2
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.9e-277 959.1 729 64.2
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 7.1e-277 957.2 719 64.8
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 2.7e-276 955.3 728 64.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.6e-276 954.5 721 63.9
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.3e-275 952.2 734 63.8
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.3e-275 952.2 725 63.7
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-274 949.9 734 63.9
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.5e-274 949.5 726 63.4
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.5e-274 949.5 730 64.7
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 3.7e-273 944.9 729 63.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 9.0e-272 940.3 709 64.3
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.2e-271 939.9 728 63.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 3.8e-270 934.9 722 62.6
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.9e-269 932.6 723 63.1
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-268 929.9 730 63.4
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.1e-268 929.1 719 63.8
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 3.5e-268 928.3 718 63.1
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 2.5e-266 922.2 718 63.2
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 7.4e-266 920.6 763 60.6
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.6e-265 919.5 719 62.7
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 3.7e-265 918.3 720 63.8
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 4.8e-265 917.9 719 62.9
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.8e-264 916.0 721 62.6
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.1e-264 915.2 725 62.2
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 4.1e-264 914.8 720 62.1
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 2.6e-263 912.1 721 61.9
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 3.4e-263 911.8 720 61.9
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 5.0e-262 907.9 721 61.4
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 6.5e-262 907.5 721 61.4
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.1e-261 906.7 723 61.7
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.4e-261 906.4 765 59.6
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 3.2e-261 905.2 730 60.7
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 4.2e-261 904.8 727 61.5
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 5.5e-261 904.4 723 61.5
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 2.1e-260 902.5 724 63.0
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 6.1e-260 901.0 788 57.7
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.0e-259 898.7 723 62.0
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 3.9e-259 898.3 745 60.4
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 5.1e-259 897.9 731 61.3
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 5.1e-259 897.9 721 62.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.9e-253 879.4 720 58.8
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 2.7e-252 875.5 719 61.2
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.6e-250 869.0 725 59.4
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 2.2e-249 865.9 691 63.0
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.5e-247 859.8 729 59.0
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 2.2e-246 855.9 726 59.5
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 1.6e-239 833.2 649 63.2
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 2.6e-239 832.4 668 61.2
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 2.4e-232 809.3 721 56.7
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.5e-231 805.4 723 57.1
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.1e-228 796.2 744 55.0
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 3.1e-224 782.3 723 56.0
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.2e-223 780.4 730 54.0
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 4.5e-223 778.5 721 54.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 3.6e-220 768.8 602 62.0
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.6e-218 762.7 700 55.4
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 4.4e-218 761.9 731 54.6
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 1.8e-216 756.5 674 58.0
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.7e-215 752.7 602 61.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 7.7e-215 751.1 605 60.8
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 8.0e-212 741.1 813 50.4
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 4.0e-211 738.8 618 60.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.7e-206 723.4 760 52.0
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 6.4e-201 704.9 638 56.0
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 8.3e-193 677.9 616 55.0
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.6e-191 673.7 618 57.8
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.6e-190 668.3 496 64.7
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.5e-189 667.2 728 49.0
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 2.8e-188 662.9 634 54.1
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.2e-186 657.5 620 55.3
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.4e-179 634.0 493 61.7
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.0e-174 617.8 731 47.5
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.0e-170 603.6 464 62.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 3.7e-164 582.8 738 45.3
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 8.1e-164 581.6 457 61.3
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.1e-163 581.3 527 57.7
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.5e-157 560.8 605 48.1
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 6.2e-156 555.4 425 65.9
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.1e-136 491.5 446 58.1
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.6e-133 480.3 585 44.3
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 2.5e-128 463.8 843 36.4
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.8e-123 447.6 576 44.4
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.7e-113 414.5 379 55.4
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.5e-113 412.5 545 42.0
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 9.8e-109 398.7 347 58.2
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-106 391.3 484 44.2
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.8e-99 367.9 289 63.0
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.0e-94 350.5 471 41.6
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.3e-84 318.5 230 65.2
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 6.6e-81 306.2 226 67.7
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 8.4e-60 236.1 376 41.2
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 3.2e-59 234.2 259 45.9
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.1e-59 233.0 125 76.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 7.3e-56 223.0 188 59.0
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 3.8e-52 210.7 312 40.7
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 7.4e-48 196.4 265 38.1
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.9e-43 181.8 144 63.9
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.2e-43 181.0 190 53.7
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.7e-42 177.9 126 66.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-37 162.2 126 64.3
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.2e-35 154.5 114 56.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.1e-30 137.5 99 63.6
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.3e-28 132.5 103 59.2
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.8e-25 122.1 169 45.0
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.4e-22 112.5 131 46.6
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 3.4e-21 107.8 61 73.8
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 2.9e-20 104.8 91 58.2
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.4e-17 95.9 105 47.6
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 3.9e-17 94.4 66 59.1
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.1e-14 86.3 44 93.2
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 4.5e-13 80.9 249 28.9
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 5.9e-13 80.5 82 53.7
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 2.5e-11 75.1 50 66.0
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.2e-10 72.8 46 69.6
A09p04910 Brassica napus HOM05D005479 ORTHO05D040437 2.7e-10 71.6 39 89.7
BraA09t36129Z Brassica rapa HOM05D005479 ORTHO05D040437 2.7e-10 71.6 39 89.7
BraA09t36128Z Brassica rapa HOM05D005479 ORTHO05D108713 1.4e-09 69.3 39 87.2
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 3.9e-09 67.8 44 61.4
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 9.7e-08 63.2 88 42.0


User provided reference genes

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