Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 7.2e-52 207.2 125 100.0
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 2.9e-37 158.7 124 79.8
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.9e-36 156.0 109 77.1
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 1.9e-36 156.0 109 77.1
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 3.3e-36 155.2 109 77.1
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 1.6e-35 152.9 121 77.7
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 4.7e-35 151.4 119 80.7
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 1.0e-34 150.2 124 77.4
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 1.4e-34 149.8 118 66.9
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 4.0e-34 148.3 125 77.6
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 5.2e-34 147.9 124 77.4
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 8.9e-34 147.1 125 76.0
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 8.9e-34 147.1 118 65.3
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 1.5e-33 146.4 124 78.2
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 4.4e-33 144.8 123 77.2
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 4.4e-33 144.8 123 77.2
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 5.7e-33 144.4 124 77.4
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 3.1e-31 138.7 110 64.5
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 3.1e-31 138.7 110 64.5
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 1.6e-30 136.3 110 63.6
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 2.0e-30 136.0 119 68.1
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 2.0e-30 136.0 116 61.2
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 2.7e-30 135.6 110 62.7
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 2.7e-30 135.6 110 62.7
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 5.9e-30 134.4 110 60.0
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 7.8e-30 134.0 113 62.8
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 1.0e-29 133.7 111 61.3
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 1.0e-29 133.7 110 60.9
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 1.3e-29 133.3 109 63.3
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 1.7e-29 132.9 110 60.0
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 1.7e-29 132.9 114 59.6
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 2.3e-29 132.5 112 61.6
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 2.9e-29 132.1 111 62.2
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 2.9e-29 132.1 110 61.8
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 6.6e-29 131.0 110 60.9
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.5e-28 129.8 110 60.0
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 1.9e-28 129.4 114 57.9
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 2.5e-28 129.0 110 61.8
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 2.5e-28 129.0 110 61.8
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 2.5e-28 129.0 115 59.1
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 3.3e-28 128.6 112 58.0
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 5.6e-28 127.9 109 61.5
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 7.3e-28 127.5 112 57.1
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 7.3e-28 127.5 114 57.0
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 9.5e-28 127.1 110 60.0
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 9.5e-28 127.1 110 60.0
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 9.5e-28 127.1 115 57.4
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 9.5e-28 127.1 112 58.0
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 1.2e-27 126.7 112 58.0
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 1.2e-27 126.7 110 58.2
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 1.6e-27 126.3 110 56.4
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 1.6e-27 126.3 110 57.3
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 1.6e-27 126.3 112 58.0
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 1.6e-27 126.3 113 57.5
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 1.6e-27 126.3 113 59.3
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 1.6e-27 126.3 111 58.6
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 1.6e-27 126.3 108 59.3
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 2.8e-27 125.6 109 57.8
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.6e-27 125.2 110 59.1
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.6e-27 125.2 110 59.1
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.6e-27 125.2 115 67.0
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 3.6e-27 125.2 114 57.9
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 8.0e-27 124.0 115 55.7
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 1.0e-26 123.6 107 58.9
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 1.0e-26 123.6 113 56.6
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 1.4e-26 123.2 109 58.7
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.8e-26 122.9 110 60.0
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 1.8e-26 122.9 104 59.6
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 1.8e-26 122.9 107 57.9
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 2.3e-26 122.5 112 56.2
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 2.3e-26 122.5 107 57.0
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 4.0e-26 121.7 109 56.0
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 4.0e-26 121.7 114 57.0
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 6.8e-26 120.9 110 56.4
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 1.2e-25 120.2 110 69.1
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 1.2e-25 120.2 107 57.9
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 1.2e-25 120.2 107 57.0
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 1.2e-25 120.2 110 57.3
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 4.4e-25 118.2 110 55.5
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 4.4e-25 118.2 110 55.5
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 5.8e-25 117.9 107 56.1
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 5.8e-25 117.9 107 55.1
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 9.8e-25 117.1 110 54.5
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 1.3e-24 116.7 84 70.2
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 2.2e-24 115.9 117 56.4
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 2.2e-24 115.9 108 67.6
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 2.2e-24 115.9 107 55.1
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 2.9e-24 115.5 112 58.0
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 2.9e-24 115.5 110 54.5
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.9e-24 114.8 86 65.1
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 6.4e-24 114.4 119 50.4
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 8.3e-24 114.0 110 52.7
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 1.4e-23 113.2 117 62.4
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 2.4e-23 112.5 112 63.4
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 3.2e-23 112.1 109 56.0
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 4.1e-23 111.7 110 55.5
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 9.2e-23 110.5 104 52.9
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.0e-22 109.4 84 63.1
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 2.0e-22 109.4 119 59.7
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 2.7e-22 109.0 80 66.2
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 3.5e-22 108.6 80 66.2
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 4.6e-22 108.2 80 67.5
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.0e-21 107.1 107 49.5
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 1.0e-21 107.1 115 51.3
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 3.0e-21 105.5 84 59.5
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.1e-20 103.6 115 60.9
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.5e-20 103.2 115 60.0
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 1.5e-20 103.2 115 60.0
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 2.5e-20 102.4 113 60.2
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 7.3e-20 100.9 94 54.3
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 4.7e-19 98.2 84 57.1
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 3.4e-17 92.0 67 67.2
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 5.8e-17 91.3 59 74.6
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.8e-17 91.3 59 74.6
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 9.8e-17 90.5 96 63.5
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 1.3e-16 90.1 113 52.2
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 2.9e-16 89.0 75 58.7
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 3.7e-16 88.6 84 63.1
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 2.4e-15 85.9 104 41.3
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 7.0e-15 84.3 75 54.7
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 7.8e-14 80.9 75 53.3
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 1.3e-13 80.1 74 50.0
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.9e-13 78.6 75 52.0
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.9e-13 78.6 75 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 2.5e-12 75.9 111 36.9
CARHR263050 Cardamine hirsuta HOM05D006288 ORTHO05D007416 5.2e-10 68.2 53 64.2
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 1.7e-08 63.2 46 65.2
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 8.3e-08 60.8 43 69.8
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 1.1e-07 60.5 97 32.0


User provided reference genes

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