Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 2.6e-56 221.9 115 100.0
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 1.7e-55 219.2 115 98.3
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 6.4e-55 217.2 115 98.3
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 6.4e-55 217.2 115 98.3
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 6.4e-55 217.2 115 98.3
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 6.4e-55 217.2 115 98.3
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 6.4e-55 217.2 115 98.3
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 8.4e-55 216.9 115 97.4
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 1.9e-54 215.7 115 97.4
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 1.9e-54 215.7 115 97.4
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 2.1e-53 212.2 115 94.8
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 2.5e-51 205.3 116 93.1
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 2.8e-50 201.8 110 94.5
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 5.8e-48 194.1 114 83.3
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 1.7e-47 192.6 111 91.0
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 5.4e-46 187.6 108 86.1
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 4.3e-43 177.9 114 78.1
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 4.0e-41 171.4 114 72.8
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 9.0e-41 170.2 104 87.5
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.6e-40 168.7 112 75.9
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 9.9e-40 166.8 114 71.1
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 4.9e-39 164.5 115 67.8
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 4.9e-39 164.5 115 66.1
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 6.4e-39 164.1 114 72.8
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 6.4e-39 164.1 114 69.3
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 1.4e-38 162.9 113 71.7
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 1.4e-38 162.9 114 69.3
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.9e-38 162.5 114 71.9
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 1.9e-38 162.5 114 69.3
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 7.1e-38 160.6 115 70.4
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 7.1e-38 160.6 113 67.3
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 7.1e-38 160.6 114 68.4
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 9.3e-38 160.2 115 69.6
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 9.3e-38 160.2 113 69.9
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 1.6e-37 159.5 114 69.3
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.1e-37 159.1 113 69.0
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.1e-37 159.1 113 68.1
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 2.1e-37 159.1 113 69.0
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 2.1e-37 159.1 113 69.0
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 2.1e-37 159.1 114 70.2
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 2.7e-37 158.7 113 69.0
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 3.5e-37 158.3 114 71.1
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 3.5e-37 158.3 113 69.0
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 7.9e-37 157.1 113 67.3
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 7.9e-37 157.1 113 63.7
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 7.9e-37 157.1 114 71.1
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 7.9e-37 157.1 114 71.1
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 1.0e-36 156.8 112 69.6
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 1.0e-36 156.8 114 68.4
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 1.3e-36 156.4 111 67.6
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 1.8e-36 156.0 114 69.3
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 2.3e-36 155.6 113 68.1
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 2.3e-36 155.6 114 67.5
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 2.3e-36 155.6 113 64.6
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 2.3e-36 155.6 114 68.4
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 3.0e-36 155.2 114 67.5
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 3.0e-36 155.2 113 62.8
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 3.9e-36 154.8 111 66.7
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 3.9e-36 154.8 113 68.1
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 6.7e-36 154.1 114 67.5
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 6.7e-36 154.1 115 67.0
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 6.7e-36 154.1 112 70.5
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 1.1e-35 153.3 113 63.7
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 1.1e-35 153.3 113 68.1
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 1.5e-35 152.9 114 66.7
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 1.9e-35 152.5 113 66.4
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 1.9e-35 152.5 106 68.9
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 1.9e-35 152.5 114 67.5
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 1.9e-35 152.5 114 67.5
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 2.5e-35 152.1 113 65.5
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.3e-35 151.8 113 67.3
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 4.3e-35 151.4 107 68.2
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 5.6e-35 151.0 113 61.9
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 9.6e-35 150.2 107 66.4
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 9.6e-35 150.2 113 66.4
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.6e-34 149.4 112 67.9
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 2.8e-34 148.7 104 72.1
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 6.2e-34 147.5 105 67.6
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 8.1e-34 147.1 106 65.1
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 1.8e-33 146.0 106 68.9
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 1.8e-33 146.0 101 72.3
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 1.8e-33 146.0 111 63.1
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 3.1e-33 145.2 138 56.5
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 4.0e-33 144.8 105 67.6
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 4.0e-33 144.8 110 60.9
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 6.9e-33 144.1 101 71.3
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 6.9e-33 144.1 113 64.6
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 3.4e-32 141.7 114 64.9
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 5.8e-32 141.0 114 66.7
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 7.6e-32 140.6 107 66.4
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.3e-31 139.8 102 65.7
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 3.8e-31 138.3 106 65.1
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 1.1e-30 136.7 102 63.7
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 2.5e-30 135.6 107 62.6
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 3.2e-30 135.2 99 66.7
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 3.2e-30 135.2 96 67.7
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 4.2e-30 134.8 95 68.4
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 4.2e-30 134.8 103 66.0
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.2e-29 133.3 101 65.3
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 1.6e-29 132.9 102 67.6
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 2.1e-29 132.5 95 67.4
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 2.1e-29 132.5 95 68.4
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 2.7e-29 132.1 96 66.7
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 1.3e-28 129.8 89 74.2
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 1.8e-28 129.4 97 66.0
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.8e-28 129.4 97 68.0
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 2.3e-28 129.0 111 55.0
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 3.0e-28 128.6 105 62.9
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 3.9e-28 128.3 91 69.2
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 6.7e-28 127.5 97 63.9
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 2.5e-27 125.6 106 62.3
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 2.5e-27 125.6 94 63.8
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 2.5e-27 125.6 102 63.7
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 3.3e-27 125.2 94 60.6
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 4.3e-27 124.8 102 58.8
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 4.3e-27 124.8 97 62.9
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 5.7e-27 124.4 89 68.5
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 5.7e-27 124.4 101 59.4
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 7.4e-27 124.0 97 62.9
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 2.8e-26 122.1 101 58.4
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 3.1e-25 118.6 98 60.2
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 3.1e-25 118.6 98 63.3
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 6.9e-25 117.5 97 60.8
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 9.0e-25 117.1 118 52.5
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 2.6e-24 115.5 96 61.5
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.3e-23 113.2 93 60.2
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 3.0e-20 102.1 75 69.3
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 8.7e-20 100.5 111 44.1
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 6.3e-18 94.4 100 51.0
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.5e-16 88.2 66 66.7
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 3.8e-15 85.1 79 54.4
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 1.4e-14 83.2 103 49.5
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.9e-14 82.8 56 71.4
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 1.8e-12 76.3 109 39.4
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.0e-11 72.8 66 56.1
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 1.8e-09 66.2 94 38.3
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 6.9e-09 64.3 52 57.7
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 2.6e-08 62.4 95 36.8
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 5.9e-08 61.2 54 59.3


User provided reference genes

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