Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.8e-140 501.5 258 100.0
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 3.4e-128 461.8 258 91.1
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.1e-126 456.8 258 90.7
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.4e-126 456.4 258 90.3
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.1e-126 455.3 258 90.7
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 3.1e-126 455.3 258 90.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.1e-126 455.3 258 90.7
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 2.0e-125 452.6 258 90.3
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 4.5e-125 451.4 258 89.9
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 7.7e-125 450.7 258 89.9
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 8.0e-122 440.7 244 91.4
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 5.2e-121 438.0 257 86.0
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 5.0e-116 421.4 253 86.6
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 5.5e-115 417.9 257 83.7
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.2e-114 416.8 253 85.8
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.1e-114 416.0 253 86.2
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 2.2e-103 379.4 263 73.0
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.1e-98 362.8 245 80.4
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.9e-83 313.2 267 59.6
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.5e-80 303.5 238 63.9
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.6e-80 302.8 261 59.8
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 4.4e-80 302.0 237 63.3
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.7e-79 300.1 244 62.3
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.7e-79 300.1 236 64.0
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.7e-79 300.1 244 62.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.9e-78 296.6 243 60.9
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.9e-78 296.6 257 59.5
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 9.3e-78 294.3 241 61.8
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 9.3e-78 294.3 241 61.8
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 2.1e-77 293.1 241 62.2
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 3.5e-77 292.4 246 62.2
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.5e-77 292.4 267 58.4
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 3.5e-77 292.4 237 62.9
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 4.6e-77 292.0 255 60.0
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 6.0e-77 291.6 251 60.6
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 7.8e-77 291.2 237 62.0
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.0e-76 290.8 238 63.4
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.7e-76 290.0 252 62.7
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.3e-76 289.7 269 57.2
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 8.7e-76 287.7 253 59.7
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.9e-75 286.6 245 58.8
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 5.6e-75 285.0 236 60.2
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 7.3e-75 284.6 253 59.7
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 9.6e-75 284.3 250 56.8
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 1.3e-74 283.9 259 60.2
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 4.8e-74 282.0 268 53.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 6.2e-74 281.6 242 59.5
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.1e-73 280.8 256 57.4
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.8e-73 280.0 257 56.8
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.8e-73 280.0 240 59.2
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.4e-73 279.6 262 55.3
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.4e-73 279.6 257 57.6
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.4e-73 279.6 257 57.6
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 2.4e-73 279.6 256 56.6
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 3.1e-73 279.3 252 60.7
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 5.3e-73 278.5 237 60.3
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 9.0e-73 277.7 256 56.2
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 9.0e-73 277.7 236 58.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 9.0e-73 277.7 236 58.5
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 9.0e-73 277.7 236 58.5
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 1.2e-72 277.3 236 58.5
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.6e-72 276.2 239 58.6
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 7.6e-72 274.6 236 57.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 7.6e-72 274.6 252 59.1
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 9.9e-72 274.2 243 59.3
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.7e-71 273.5 242 57.9
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.7e-71 273.5 238 60.5
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.2e-71 273.1 226 60.2
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.9e-71 272.7 240 58.3
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 3.8e-71 272.3 239 59.0
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 4.9e-71 271.9 237 59.5
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 4.9e-71 271.9 239 57.7
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.1e-70 270.8 241 60.6
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.2e-69 267.3 236 58.5
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.2e-69 267.3 240 59.2
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 7.9e-69 264.6 237 58.6
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.0e-68 264.2 246 58.1
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.7e-68 263.5 256 54.3
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 3.9e-68 262.3 249 56.6
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 7.3e-67 258.1 249 53.0
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 3.6e-66 255.8 240 55.0
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.1e-65 254.2 240 57.5
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.1e-65 254.2 251 53.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.8e-65 253.4 232 58.6
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 3.1e-65 252.7 235 56.6
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.1e-65 252.7 235 56.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 3.1e-65 252.7 246 54.9
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 4.5e-64 248.8 240 55.0
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 7.6e-64 248.1 246 54.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 9.9e-64 247.7 244 52.5
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.3e-63 247.3 239 54.4
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.7e-63 246.9 244 54.9
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-63 246.5 242 51.7
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.2e-63 246.5 244 55.3
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 2.9e-63 246.1 235 55.3
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.1e-62 241.5 208 59.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.2e-61 240.7 226 55.3
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.2e-61 240.7 234 53.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.2e-61 240.7 229 52.4
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 2.1e-61 240.0 224 54.9
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 2.1e-61 240.0 245 52.2
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.6e-61 238.8 239 53.1
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 5.1e-60 235.3 249 54.2
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.5e-59 233.8 241 51.9
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.9e-59 233.4 243 51.0
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 4.8e-58 228.8 267 48.3
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.5e-56 223.8 197 56.3
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.6e-56 223.0 250 48.8
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 5.8e-56 221.9 236 54.2
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.3e-55 220.7 241 50.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.7e-55 220.3 210 58.6
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 9.3e-54 214.5 231 50.6
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 7.9e-53 211.5 239 49.4
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 7.9e-53 211.5 254 47.6
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.9e-51 206.8 181 58.6
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.9e-51 206.8 265 46.4
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.7e-51 205.3 211 53.1
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 2.7e-45 186.4 224 47.8
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.3e-44 183.3 142 57.7
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 6.7e-44 181.8 234 44.0
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 3.2e-38 162.9 220 40.5
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.9e-33 145.2 122 53.3
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 3.4e-32 142.9 209 40.2
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 5.5e-30 135.6 94 79.8
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 5.5e-30 135.6 94 79.8
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.7e-29 133.3 165 45.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.3e-28 130.2 133 52.6
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.9e-28 129.4 145 46.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 5.1e-28 129.0 217 37.8
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.5e-27 127.5 226 37.2
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.5e-27 127.5 231 35.1
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 9.7e-27 124.8 233 37.3
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.7e-26 124.0 182 44.5
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.1e-25 121.3 182 44.0
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.4e-25 120.2 225 36.4
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 3.1e-25 119.8 159 40.9
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 4.1e-25 119.4 231 35.5
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.5e-22 110.9 154 45.5
BcaC06g30702 Brassica carinata HOM05D005143 ORTHO05D006404 3.8e-15 86.3 55 78.2
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 2.5e-14 83.6 75 58.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.8e-12 75.5 70 62.9
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-06 58.2 91 37.4
SMO141G0117 Selaginella moellendorffii HOM05D001019 ORTHO05D000859 4.2e-06 56.2 174 29.3
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 7.2e-06 55.5 49 59.2


User provided reference genes

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