Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 2.0e-96 355.9 195 100.0
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 1.2e-85 320.1 195 89.7
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.0e-81 307.0 196 87.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.5e-77 292.0 208 78.4
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 6.5e-76 287.7 205 79.5
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-71 273.1 195 78.5
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.4e-70 270.0 196 78.6
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.4e-70 270.0 196 78.6
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 1.6e-69 266.5 196 77.6
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 4.5e-69 265.0 196 76.5
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.2e-66 256.9 211 68.7
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.6e-66 256.5 198 74.7
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.6e-66 256.5 198 74.7
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.0e-60 237.3 208 68.8
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.3e-59 232.3 198 70.2
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 9.5e-59 230.7 199 68.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 3.1e-57 225.7 227 62.6
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.2e-56 223.8 198 68.2
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-51 206.8 199 63.8
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 1.2e-50 203.8 175 65.1
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 4.0e-49 198.7 195 64.1
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.7e-47 193.4 166 62.7
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 4.9e-47 191.8 140 77.9
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.1e-46 190.7 173 60.1
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 3.2e-46 189.1 162 62.3
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 4.6e-45 185.3 175 57.7
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.7e-44 183.3 165 60.6
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.7e-44 183.3 174 58.0
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.7e-44 183.3 175 57.7
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 2.1e-42 176.4 175 59.4
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.6e-42 175.6 167 59.3
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 8.1e-42 174.5 182 54.9
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.1e-41 174.1 166 58.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 1.8e-41 173.3 181 53.6
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 6.8e-41 171.4 180 52.8
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 6.8e-41 171.4 195 53.8
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 5.8e-40 168.3 172 55.8
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 7.6e-40 167.9 174 55.2
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 6.4e-39 164.9 167 55.1
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 6.4e-39 164.9 172 53.5
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 8.4e-39 164.5 172 53.5
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.1e-38 164.1 167 56.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.4e-38 163.7 175 56.0
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 1.9e-38 163.3 175 54.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.9e-38 163.3 199 50.8
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 5.4e-38 161.8 177 55.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.2e-37 160.6 184 54.3
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.6e-37 160.2 201 49.3
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 3.5e-37 159.1 167 55.1
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 6.0e-37 158.3 175 56.6
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.3e-36 157.1 173 52.6
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.7e-36 156.8 171 55.0
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-36 156.8 175 55.4
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.0e-36 156.0 173 52.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.0e-36 156.0 175 56.0
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.0e-36 156.0 173 56.1
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 2.1e-34 149.8 194 47.4
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 4.7e-34 148.7 163 54.0
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 6.2e-34 148.3 171 50.9
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.1e-33 147.5 162 51.9
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.4e-33 147.1 151 57.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.4e-33 147.1 188 50.0
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 5.2e-33 145.2 175 50.3
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 6.9e-33 144.8 175 48.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 6.9e-33 144.8 175 48.6
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 2.0e-32 143.3 147 59.9
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 7.6e-32 141.4 169 49.1
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.7e-31 140.2 162 51.2
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 3.8e-31 139.0 162 50.6
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 3.8e-31 139.0 169 50.3
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.8e-31 139.0 169 50.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.1e-30 137.5 161 49.1
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.1e-30 137.5 156 50.0
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.1e-30 137.5 161 53.4
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.4e-30 137.1 169 49.7
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.4e-30 137.1 156 54.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.2e-30 136.0 175 46.9
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.4e-30 135.2 160 48.8
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.4e-30 135.2 188 45.7
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.6e-29 133.7 190 43.2
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 3.9e-28 129.0 158 50.6
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.9e-28 129.0 242 38.8
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 8.7e-28 127.9 193 44.0
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.1e-27 127.5 158 46.8
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 4.3e-27 125.6 184 44.6
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 2.1e-26 123.2 158 45.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 4.8e-26 122.1 173 43.4
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 6.2e-26 121.7 169 46.2
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 8.1e-26 121.3 158 44.9
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-25 120.6 164 43.9
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 5.3e-25 118.6 196 44.9
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.9e-25 118.2 179 44.1
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 2.6e-24 116.3 157 46.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 2.6e-24 116.3 175 42.9
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.6e-24 114.8 69 79.7
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 2.2e-23 113.2 192 40.6
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 2.9e-23 112.8 107 57.0
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 2.9e-23 112.8 234 36.8
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.4e-22 109.8 159 45.3
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 3.2e-22 109.4 153 47.1
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.2e-22 109.0 173 40.5
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 7.1e-22 108.2 179 38.5
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.1e-21 106.7 200 41.5
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 2.7e-21 106.3 175 41.1
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 7.9e-21 104.8 193 40.9
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.3e-20 103.2 109 59.6
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.9e-20 102.4 187 40.6
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 5.1e-20 102.1 169 41.4
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 6.7e-20 101.7 154 41.6
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 6.7e-20 101.7 154 41.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 8.7e-20 101.3 172 42.4
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.5e-19 100.5 163 42.9
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 4.3e-19 99.0 167 41.9
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 5.6e-19 98.6 178 41.6
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.1e-18 96.7 98 58.2
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.0e-17 92.4 171 39.2
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 3.4e-16 89.4 149 38.9
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 4.5e-16 89.0 159 40.3
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 5.8e-16 88.6 86 60.5
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 5.8e-16 88.6 179 36.9
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 2.2e-15 86.7 201 34.8
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 1.4e-14 84.0 123 44.7
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.9e-14 83.6 119 42.9
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 5.5e-14 82.0 51 80.4
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.6e-13 80.5 182 34.6
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.1e-13 80.1 167 34.7
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 3.5e-13 79.3 160 42.5
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.5e-13 79.3 160 42.5
CARHR150300 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.0e-12 77.8 70 62.9
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.8e-12 77.0 103 49.5
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 3.0e-12 76.3 196 34.2
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.3e-11 72.8 171 33.9
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 9.6e-11 71.2 114 41.2
C09p05140 Brassica napus HOM05D005061 ORTHO05D006001 6.2e-10 68.6 48 72.9
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 6.9e-09 65.1 103 44.7
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 9.0e-09 64.7 72 54.2
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 9.0e-09 64.7 72 54.2
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-08 64.3 98 44.9
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.4e-08 62.8 100 39.0
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.4e-08 62.8 100 39.0
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.4e-08 62.8 69 53.6
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 7.6e-08 61.6 125 40.0
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.6e-08 61.6 57 63.2
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.7e-07 60.5 71 56.3
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 1.1e-06 57.8 176 30.7
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 1.9e-06 57.0 63 57.1
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.2e-06 56.2 135 38.5
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-06 55.5 121 38.8
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.5e-06 55.5 156 37.2


User provided reference genes

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