Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 3.6e-82 308.5 194 100.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.8e-65 251.1 198 73.2
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 3.4e-64 248.8 197 72.6
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 7.5e-56 221.1 189 66.1
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 7.5e-48 194.5 199 61.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 4.1e-46 188.7 200 60.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.8e-42 176.0 204 55.9
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-41 173.3 194 56.7
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.8e-41 173.3 194 56.7
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.8e-41 173.3 194 56.7
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 3.1e-41 172.6 194 56.7
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 4.0e-41 172.2 228 51.3
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 6.8e-41 171.4 194 56.2
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-40 170.2 224 51.8
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.5e-40 170.2 224 51.8
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 3.2e-38 162.5 195 54.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 4.1e-38 162.2 227 49.8
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 2.0e-37 159.8 222 49.1
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 6.0e-37 158.3 204 55.4
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 6.0e-37 158.3 204 49.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 5.0e-36 155.2 204 51.5
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 6.6e-36 154.8 205 58.5
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.9e-35 153.3 210 49.5
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 4.3e-35 152.1 204 48.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.3e-35 152.1 210 52.4
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.2e-34 150.6 196 57.7
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.1e-34 149.8 205 54.6
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.7e-34 148.7 213 51.2
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.1e-33 147.5 205 49.8
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.1e-33 147.5 204 48.5
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.4e-33 147.1 208 47.6
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.1e-33 146.0 206 48.1
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 4.0e-33 145.6 208 51.4
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.0e-33 145.6 208 51.4
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.0e-33 145.6 208 51.4
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.0e-33 145.6 204 47.5
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 4.0e-33 145.6 204 46.6
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 4.0e-33 145.6 204 46.6
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 5.2e-33 145.2 204 54.9
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 6.8e-33 144.8 200 48.0
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 8.9e-33 144.4 204 50.0
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.2e-32 144.1 206 51.9
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 2.0e-32 143.3 209 56.5
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 2.6e-32 142.9 205 50.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.6e-32 142.9 204 46.6
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 3.4e-32 142.5 205 50.7
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 4.4e-32 142.1 207 46.4
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 7.5e-32 141.4 205 51.2
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 7.5e-32 141.4 208 57.2
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.5e-32 141.4 196 48.5
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.8e-32 141.0 204 56.9
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 9.8e-32 141.0 204 58.3
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-31 140.6 204 52.5
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.7e-31 140.2 205 46.8
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 3.7e-31 139.0 207 46.9
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.9e-31 138.7 212 46.7
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 4.9e-31 138.7 204 56.4
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.9e-31 138.7 207 46.9
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 8.3e-31 137.9 204 46.6
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.1e-30 137.5 205 46.3
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.4e-30 137.1 204 46.6
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.4e-30 137.1 204 47.5
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 9.2e-30 134.4 204 52.0
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.2e-29 134.0 215 46.0
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.2e-29 134.0 215 45.6
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 2.7e-29 132.9 205 44.9
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.5e-29 132.5 203 45.8
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 4.6e-29 132.1 202 45.0
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 6.0e-29 131.7 214 47.2
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 7.8e-29 131.3 201 47.3
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 7.8e-29 131.3 209 45.9
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.3e-28 129.8 206 42.2
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 3.0e-28 129.4 212 47.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 3.0e-28 129.4 206 46.6
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.9e-28 129.0 197 45.7
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 3.9e-28 129.0 194 44.3
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 8.6e-28 127.9 206 47.1
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 8.6e-28 127.9 214 49.5
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.1e-27 127.5 204 44.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.1e-27 127.5 197 45.2
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.1e-27 127.5 197 45.2
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.9e-27 126.7 204 44.6
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 3.3e-27 125.9 212 46.7
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.3e-27 125.9 206 48.1
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 7.3e-27 124.8 206 42.7
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.6e-26 123.6 213 46.9
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 2.8e-26 122.9 204 44.1
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.8e-26 122.9 207 42.5
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 3.6e-26 122.5 193 42.0
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 8.1e-26 121.3 204 41.7
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.1e-25 120.9 204 47.5
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.4e-25 120.6 205 49.8
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.8e-25 120.2 207 45.4
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 1.8e-25 120.2 197 42.6
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.3e-25 119.8 214 46.7
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.3e-25 119.8 214 46.7
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 3.1e-25 119.4 204 51.0
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 4.0e-25 119.0 205 45.9
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 8.9e-25 117.9 207 40.1
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 1.2e-24 117.5 194 42.3
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 4.4e-24 115.5 215 46.0
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 4.4e-24 115.5 215 46.0
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.4e-24 115.5 207 44.4
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 5.8e-24 115.2 210 47.1
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.2e-23 113.2 213 38.5
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 6.4e-23 111.7 199 47.7
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 8.4e-23 111.3 194 43.3
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 8.4e-23 111.3 189 43.4
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.1e-22 108.2 206 40.8
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 9.2e-22 107.8 203 48.3
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.1e-21 106.7 208 40.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 2.7e-21 106.3 206 42.2
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 2.7e-21 106.3 215 41.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 4.6e-21 105.5 146 46.6
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 6.0e-21 105.1 208 40.9
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.0e-20 104.4 214 40.2
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.0e-20 104.4 206 43.2
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.7e-20 103.6 204 40.2
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 3.9e-20 102.4 203 39.4
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 5.1e-20 102.1 209 42.1
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 5.1e-20 102.1 199 38.7
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 6.6e-20 101.7 207 49.8
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.9e-19 100.1 209 37.3
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 2.5e-19 99.8 72 70.8
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.2e-18 97.4 217 41.9
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.2e-18 97.4 196 40.3
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 1.1e-17 94.4 204 36.3
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 5.2e-17 92.0 208 42.8
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 5.2e-17 92.0 208 42.8
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 6.9e-17 91.7 204 35.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 5.8e-16 88.6 192 35.4
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.7e-15 87.0 207 34.8
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.5e-13 79.3 85 49.4
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 7.8e-13 78.2 199 33.2
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.0e-12 77.8 68 61.8
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 3.9e-12 75.9 179 31.3
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.1e-10 68.2 40 80.0
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 2.0e-08 63.5 93 47.3
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.6e-08 63.2 209 31.1
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 9.9e-08 61.2 81 51.9
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.9e-07 59.7 204 28.9


User provided reference genes

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