Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 2029.2 1024 100.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1804.6 1051 87.1
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1795.8 1050 86.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1660.2 1061 78.7
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1659.0 1064 78.5
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1655.6 1054 79.7
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1654.4 1076 77.6
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1654.4 1077 77.9
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1640.6 970 84.1
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1597.4 1044 76.9
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 0.0e+00 1515.4 883 85.2
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1514.2 1053 72.6
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 0.0e+00 1489.2 886 84.1
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1241.1 1053 58.4
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1237.6 1018 60.9
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1210.7 1047 58.5
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1208.7 1004 59.9
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1207.6 1039 59.0
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1205.7 1024 57.4
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1202.6 1022 59.1
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1194.9 1024 56.8
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1180.6 1026 58.3
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1156.7 1023 57.0
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1152.5 1022 57.2
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1150.6 1023 56.5
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1147.1 1036 56.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1144.4 1023 55.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1139.0 1023 55.9
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1137.1 1027 55.2
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1130.9 1011 55.9
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1130.9 1011 55.9
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1128.6 1029 55.2
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1125.2 1052 54.8
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1125.2 1052 54.1
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1120.9 1052 54.0
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1120.1 1043 54.8
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1115.9 1055 54.3
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1098.2 1054 53.8
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1097.4 1050 53.9
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1097.4 1039 54.1
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1095.5 1050 53.1
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1093.6 1011 54.6
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1093.2 1022 54.8
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1093.2 1042 53.6
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1092.0 1004 53.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1084.3 1096 50.5
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 4.9e-311 1071.2 1061 53.4
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 2.3e-305 1052.4 1028 53.1
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 3.3e-304 1048.5 1127 48.9
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 4.8e-303 1044.6 1028 52.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 5.3e-302 1041.2 1019 51.2
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.9e-301 1037.7 1036 50.3
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 7.2e-299 1030.8 1029 52.5
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 4.7e-298 1028.1 1028 51.9
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 2.3e-297 1025.8 1028 51.8
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 3.0e-297 1025.4 1008 52.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.7e-295 1018.5 961 54.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.8e-294 1016.1 1071 48.9
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 2.2e-292 1009.2 996 50.9
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 9.4e-291 1003.8 1009 51.0
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 8.8e-289 997.3 960 53.8
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 3.3e-288 995.3 1003 50.9
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 7.4e-288 994.2 905 55.4
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.0e-285 986.1 992 50.6
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.7e-284 983.0 1023 49.4
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 6.5e-284 981.1 1070 47.9
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 2.5e-283 979.2 961 50.4
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.4e-283 977.2 1019 49.4
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 6.1e-282 974.5 982 50.1
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 3.3e-280 968.8 852 56.9
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.7e-279 966.5 933 52.1
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 3.8e-276 955.3 1036 49.5
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.5e-272 943.3 1023 48.3
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 8.3e-271 937.6 1002 48.9
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 4.7e-266 921.8 1019 47.1
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.8e-257 893.3 880 52.6
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 2.0e-256 889.8 1082 44.0
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.6e-256 889.4 1022 46.3
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 3.7e-255 885.6 768 56.9
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.5e-251 872.8 908 51.1
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.1e-246 857.4 771 56.9
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 2.1e-245 853.2 1014 45.0
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.3e-241 839.7 1030 43.6
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.4e-238 830.5 1016 45.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 3.1e-233 812.8 757 54.4
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.1e-222 777.7 692 56.4
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 6.0e-221 771.9 997 42.6
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 7.3e-219 765.0 876 47.1
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.1e-209 734.6 680 55.1
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.3e-204 717.6 1012 39.6
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.8e-201 707.2 668 53.6
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 2.8e-194 683.3 1036 39.5
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 9.4e-190 668.3 741 48.2
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.8e-186 656.8 546 59.7
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.1e-179 634.8 587 54.3
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.8e-169 600.9 640 47.8
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 8.3e-162 575.5 503 56.7
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 4.6e-144 516.5 585 47.0
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 3.9e-111 407.1 332 59.6
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.4e-99 367.5 312 59.3
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-92 344.7 415 44.8
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 9.0e-92 342.8 342 49.7
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.0e-84 316.2 988 27.1
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 6.3e-77 293.5 218 62.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 6.9e-68 263.5 300 45.7
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 6.9e-68 263.5 226 58.0
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 3.3e-62 244.6 220 55.9
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 9.4e-57 226.5 173 62.4
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 4.4e-54 217.6 245 47.3
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-53 215.7 206 52.4
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 5.0e-50 204.1 350 35.4
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.7e-48 197.6 161 58.4
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.0e-47 196.4 141 71.6
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.8e-47 193.4 893 24.2
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.6e-43 182.6 179 53.6
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.5e-42 177.2 1076 22.2
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.4e-41 173.3 179 51.4
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.0e-39 169.9 533 25.7
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-39 169.5 179 50.8
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.8e-36 159.1 713 24.5
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 7.0e-36 157.1 125 58.4
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 5.0e-34 151.0 120 55.8
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.0e-31 143.3 97 70.1
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.3e-31 142.1 101 71.3
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 8.9e-31 140.2 130 53.1
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-30 138.3 127 50.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 9.8e-30 136.7 130 52.3
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 9.8e-30 136.7 208 34.6
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 4.9e-29 134.4 161 43.5
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 5.6e-25 120.9 139 45.3
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.0e-23 114.8 143 44.1
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.2e-21 109.0 83 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.9e-21 107.8 935 22.4
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.9e-20 105.9 58 82.8
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.9e-20 105.9 83 57.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-20 105.5 57 82.5
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 5.4e-20 104.4 58 81.0
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.6e-18 97.4 348 26.1
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 9.5e-17 93.6 54 83.3
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 9.5e-17 93.6 79 57.0
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.1e-15 90.1 80 65.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 3.1e-15 88.6 66 63.6
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.8e-14 83.6 349 23.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.7e-11 75.5 231 27.7
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.0e-11 74.3 74 56.8
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.3e-10 72.4 369 21.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 4.7e-08 64.7 104 40.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 4.7e-08 64.7 65 50.8
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 8.1e-08 63.9 136 36.0
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 1.8e-07 62.8 50 62.0
BolC7t44496H Brassica oleracea HOM05D039519 ORTHO05D032788 1.8e-07 62.8 50 62.0
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.1e-07 62.0 457 22.8
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 8.9e-07 60.5 204 22.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.5e-06 59.7 46 58.7


User provided reference genes

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