Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0863 Capsella rubella HOM05D010086 ORTHO05D010053 6.3e-44 180.3 83 100.0
AT5G48905 Arabidopsis thaliana HOM05D010086 ORTHO05D010053 5.5e-32 140.6 79 75.9
AL8G22100 Arabidopsis lyrata HOM05D010086 ORTHO05D010053 2.1e-31 138.7 79 74.7
A09p04690 Brassica napus HOM05D010086 ORTHO05D010053 1.3e-28 129.4 80 68.8
BraA09t36106Z Brassica rapa HOM05D010086 ORTHO05D010053 1.3e-28 129.4 80 68.8
C09p05000 Brassica napus HOM05D010086 ORTHO05D010053 1.4e-27 125.9 78 67.9
BolC9t53429H Brassica oleracea HOM05D010086 ORTHO05D010053 1.4e-27 125.9 78 67.9
Thhalv10005578m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 1.8e-27 125.6 82 68.3
BcaC06g30726 Brassica carinata HOM05D010086 ORTHO05D010053 5.3e-27 124.0 82 64.6
CARHR183110 Cardamine hirsuta HOM05D010086 ORTHO05D010053 2.6e-26 121.7 80 68.8
C07p39500 Brassica napus HOM05D010086 ORTHO05D010053 1.1e-24 116.3 82 62.2
BolC7t44469H Brassica oleracea HOM05D010086 ORTHO05D010053 1.1e-24 116.3 82 62.2
CARHR182780 Cardamine hirsuta HOM05D010086 ORTHO05D010053 4.2e-24 114.4 80 65.0
THA.LOC109116887 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 1.2e-23 112.8 75 65.3
Thhalv10005401m.g Eutrema salsugineum HOM05D010086 ORTHO05D010053 1.6e-23 112.5 80 60.0
BraA06t26798Z Brassica rapa HOM05D010086 ORTHO05D010053 2.7e-23 111.7 82 59.8
THA.LOC109116902 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 4.7e-23 110.9 75 64.0
A06p38820 Brassica napus HOM05D010086 ORTHO05D010053 4.0e-22 107.8 82 58.5
Aa31sc98G20 Aethionema arabicum HOM05D010086 ORTHO05D010053 1.5e-21 105.9 66 65.2
BcaC06g30747 Brassica carinata HOM05D010086 ORTHO05D010053 3.3e-21 104.8 73 60.3
CARHR106230 Cardamine hirsuta HOM05D010086 ORTHO05D010053 1.8e-19 99.0 66 62.1
CARHR182790 Cardamine hirsuta HOM05D010086 ORTHO05D010053 2.7e-18 95.1 71 59.2
THA.LOC104818938 Tarenaya hassleriana HOM05D010086 ORTHO05D010053 5.9e-18 94.0 75 61.3
DCAR_019487 Daucus carota HOM05D013903 ORTHO05D010053 1.7e-09 65.9 72 43.1
DCAR_019488 Daucus carota HOM05D013903 ORTHO05D010053 1.7e-09 65.9 79 43.0
Gohir.D01G011100 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.5e-08 62.8 81 39.5
AT4G29283 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 2.5e-08 62.0 78 38.5
Gohir.D01G011200 Gossypium hirsutum HOM05D010058 ORTHO05D010053 2.5e-08 62.0 81 35.8
AT4G29305 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 4.2e-08 61.2 78 38.5
Gohir.A01G012250 Gossypium hirsutum HOM05D010058 ORTHO05D010053 5.5e-08 60.8 81 39.5
A08p18860 Brassica napus HOM05D008236 ORTHO05D010394 9.4e-08 60.1 79 36.7
BraA08t33847Z Brassica rapa HOM05D008236 ORTHO05D010394 9.4e-08 60.1 79 36.7
Gohir.D01G011000 Gossypium hirsutum HOM05D010058 ORTHO05D010053 9.4e-08 60.1 81 38.3
Gohir.D01G011300 Gossypium hirsutum HOM05D010058 ORTHO05D010053 9.4e-08 60.1 81 37.0
Gorai.002G013200 Gossypium raimondii HOM05D010058 ORTHO05D010053 9.4e-08 60.1 81 37.0
BolC3t20299H Brassica oleracea HOM05D008236 ORTHO05D010394 1.2e-07 59.7 80 38.8
Gohir.A01G013201 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.6e-07 59.3 81 38.3
Gorai.002G013100 Gossypium raimondii HOM05D010058 ORTHO05D010053 2.7e-07 58.5 81 35.8
AT4G29300 Arabidopsis thaliana HOM05D008236 ORTHO05D010394 3.6e-07 58.2 80 40.0
CARHR237060 Cardamine hirsuta HOM05D008236 ORTHO05D010394 3.6e-07 58.2 72 37.5
BolC3t21135H Brassica oleracea HOM05D008236 ORTHO05D010394 1.0e-06 56.6 79 35.4
C03p88270 Brassica napus HOM05D008236 ORTHO05D010394 1.4e-06 56.2 79 35.4
Aqoxy5G00349 Aquilegia oxysepala HOM05D014595 ORTHO05D010053 1.8e-06 55.8 70 40.0
Gohir.A01G011300 Gossypium hirsutum HOM05D010058 ORTHO05D010053 1.8e-06 55.8 81 37.0
Migut.K00030 Erythranthe guttata HOM05D013903 ORTHO05D010053 2.3e-06 55.5 66 42.4
BcaB03g12677 Brassica carinata HOM05D008236 ORTHO05D010394 3.0e-06 55.1 79 38.0
A08p21900 Brassica napus HOM05D008236 ORTHO05D010394 3.0e-06 55.1 80 38.8
BraA08t34143Z Brassica rapa HOM05D008236 ORTHO05D010394 3.0e-06 55.1 80 38.8
Phvul.010G002400 Phaseolus vulgaris HOM05D011857 ORTHO05D010053 5.2e-06 54.3 85 35.3
BcaC01g00492 Brassica carinata HOM05D008236 ORTHO05D010394 6.8e-06 53.9 78 35.9
C03p80630 Brassica napus HOM05D008236 ORTHO05D010394 6.8e-06 53.9 78 35.9
BolC3t20306H Brassica oleracea HOM05D008236 ORTHO05D010394 6.8e-06 53.9 78 35.9


User provided reference genes

Program Settings