Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.6e-164 582.8 313 100.0
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 7.9e-148 527.3 313 86.6
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.8e-147 526.2 313 86.9
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.9e-141 506.1 314 86.0
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 7.1e-141 504.2 315 81.6
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.3e-139 500.0 315 80.6
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.9e-139 498.4 315 80.0
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.5e-138 496.5 315 79.7
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.5e-138 495.7 316 79.4
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 4.3e-138 495.0 312 81.1
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 3.1e-136 488.8 309 82.2
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 3.3e-130 468.8 307 76.9
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.1e-120 437.2 309 69.6
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 7.0e-120 434.5 309 69.3
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 9.1e-120 434.1 309 69.3
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 2.6e-119 432.6 313 66.8
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.3e-118 430.3 309 68.6
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.2e-118 429.5 309 68.6
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 6.5e-118 427.9 319 67.1
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.5e-118 427.6 276 79.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 4.2e-117 425.2 313 68.4
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 5.5e-117 424.9 311 69.5
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 9.4e-117 424.1 274 78.8
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.3e-115 419.5 314 65.9
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 3.0e-115 419.1 314 68.2
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.9e-115 418.7 308 66.6
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 3.9e-115 418.7 311 66.2
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 6.7e-115 417.9 314 66.2
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.1e-114 417.2 318 70.8
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.1e-114 417.2 318 70.8
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.5e-114 416.8 314 64.6
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.5e-114 416.8 310 65.5
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.0e-114 416.4 315 66.3
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.6e-114 416.0 323 64.4
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.7e-114 414.8 312 64.7
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.3e-113 413.7 308 66.9
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.3e-113 413.7 309 65.0
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.3e-113 413.7 318 70.4
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.7e-113 413.3 308 65.3
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 2.8e-113 412.5 313 66.5
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 3.7e-113 412.1 310 65.5
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.7e-113 412.1 309 67.3
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 4.8e-113 411.8 311 66.2
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 6.3e-113 411.4 309 67.3
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 6.3e-113 411.4 310 64.8
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.1e-112 410.6 315 65.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.1e-112 410.6 315 65.4
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.4e-112 410.2 315 64.1
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.8e-112 409.8 316 65.2
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.8e-112 409.8 324 62.3
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 2.4e-112 409.5 309 65.0
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.1e-112 409.1 314 64.0
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.1e-112 409.1 315 65.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 3.1e-112 409.1 298 67.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 7.0e-112 407.9 309 65.7
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 9.1e-112 407.5 311 65.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.6e-111 406.8 310 62.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.6e-111 406.8 310 64.5
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-111 406.4 311 65.3
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 3.5e-111 405.6 309 67.3
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 4.5e-111 405.2 310 63.9
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 7.7e-111 404.4 309 66.7
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.0e-110 404.1 302 65.9
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.9e-110 402.5 312 65.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 2.9e-110 402.5 298 66.8
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.8e-110 402.1 307 67.4
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 3.8e-110 402.1 315 63.8
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 6.5e-110 401.4 309 64.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.1e-109 400.6 311 63.3
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.5e-109 400.2 315 64.8
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.9e-109 399.8 309 64.4
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 3.2e-109 399.1 311 63.0
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.2e-109 398.7 311 63.3
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 5.5e-109 398.3 306 64.4
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 5.5e-109 398.3 309 63.1
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 5.5e-109 398.3 309 65.4
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 5.5e-109 398.3 308 64.0
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 7.2e-109 397.9 315 63.5
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 7.2e-109 397.9 319 63.0
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 7.2e-109 397.9 309 63.4
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 3.0e-107 392.5 311 62.7
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 6.7e-107 391.3 336 59.5
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 4.4e-106 388.7 308 62.3
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 7.5e-106 387.9 309 63.1
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.3e-105 387.1 335 58.8
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 2.8e-105 386.0 279 67.7
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.4e-104 383.6 312 64.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 9.1e-104 380.9 306 62.1
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.5e-103 379.0 306 62.1
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.3e-102 377.1 315 61.0
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.2e-101 372.5 312 62.5
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 7.2e-101 371.3 306 60.8
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.3e-99 366.3 320 59.4
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.1e-96 355.9 310 60.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 5.9e-95 351.7 329 58.1
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 5.0e-94 348.6 308 58.8
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 5.5e-93 345.1 376 51.9
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 3.4e-90 335.9 305 57.0
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 4.9e-89 332.0 305 55.7
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 9.2e-88 327.8 232 69.4
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.2e-87 327.4 304 54.6
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.7e-86 323.6 305 53.8
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.3e-85 318.9 227 67.0
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.3e-83 313.2 298 54.7
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 6.6e-78 295.0 233 63.1
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 6.2e-76 288.5 352 45.7
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.8e-74 281.2 278 55.8
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 4.9e-73 278.9 337 51.3
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.0e-72 275.0 235 59.1
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.6e-66 256.5 194 62.9
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 2.5e-61 240.0 183 62.3
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 7.3e-61 238.4 186 64.0
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.8e-58 228.8 207 55.6
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 8.1e-52 208.4 207 53.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.0e-46 191.4 287 41.8
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.1e-43 181.4 155 56.8
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 9.3e-40 168.3 232 43.5
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.2e-39 167.9 329 35.0
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.2e-39 167.9 158 54.4
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.0e-39 165.6 212 47.2
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 2.8e-36 156.8 102 72.5
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 3.3e-29 133.3 308 33.1
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.1e-27 128.3 124 54.0
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 4.2e-24 116.3 165 45.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.3e-21 106.7 121 52.1
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.1e-19 101.7 148 38.5
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 1.4e-19 101.3 66 72.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 9.0e-19 98.6 125 51.2
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.2e-16 90.1 63 71.4
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.7e-15 87.0 65 60.0
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 4.6e-15 86.3 82 51.2
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 9.7e-13 78.6 103 43.7
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.3e-12 78.2 73 54.8
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.2e-12 77.4 117 41.0
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 4.8e-12 76.3 81 51.9
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.8e-11 74.3 74 51.4
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-10 70.9 88 43.2
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-07 60.1 83 41.0
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 3.6e-07 60.1 162 35.8
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 3.6e-07 60.1 162 35.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 6.1e-07 59.3 60 48.3


User provided reference genes

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